Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11758375	0.89[ASN][1000 genomes]
rs11758402	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11968293	0.88[ASN][1000 genomes]
rs1572226	0.88[ASN][1000 genomes]
rs17079898	0.83[ASN][1000 genomes]
rs2065021	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs369383	0.80[ASN][1000 genomes]
rs397445	0.82[ASN][1000 genomes]
rs399844	0.81[ASN][1000 genomes]
rs419592	0.80[ASN][1000 genomes]
rs445099	0.80[ASN][1000 genomes]
rs55697000	0.85[ASN][1000 genomes]
rs6569009	0.82[ASN][1000 genomes]
rs6927800	0.88[ASN][1000 genomes]
rs6940985	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72965660	0.85[ASN][1000 genomes]
rs731695	0.84[ASN][1000 genomes]
rs7452622	0.86[ASN][1000 genomes]
rs7749263	0.83[ASN][1000 genomes]
rs927348	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118614400-118620200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr6:118615000-118618800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:118616600-118620000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:118616800-118620000	Weak transcription	Fetal Stomach	stomach
5	chr6:118617200-118620200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:118617600-118619000	Weak transcription	Left Ventricle	heart
7	chr6:118617600-118619000	Weak transcription	Psoas Muscle	Psoas
8	chr6:118617600-118619000	Weak transcription	Right Atrium	heart
9	chr6:118617800-118618800	Enhancers	Brain Anterior Caudate	brain
10	chr6:118618000-118619000	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:118618000-118620000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:118618400-118618800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr6:118618600-118619200	Enhancers	Aorta	Aorta
14	chr6:118618600-118619600	Weak transcription	Fetal Heart	heart
15	chr6:118618600-118626800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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