Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11758375	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11758402	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11968293	0.88[ASN][1000 genomes]
rs1572226	0.88[ASN][1000 genomes]
rs17079898	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs281868	0.82[EUR][1000 genomes]
rs283077	0.82[EUR][1000 genomes]
rs387945	0.80[ASN][1000 genomes]
rs397445	0.80[ASN][1000 genomes]
rs399844	0.81[ASN][1000 genomes]
rs414091	0.80[ASN][1000 genomes]
rs422268	0.80[ASN][1000 genomes]
rs4294041	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs445566	0.80[ASN][1000 genomes]
rs4946333	0.82[EUR][1000 genomes]
rs55697000	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6569009	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6912208	0.82[EUR][1000 genomes]
rs6927800	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6940985	0.93[ASN][1000 genomes]
rs72965660	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs731695	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7452622	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7749263	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs89107	0.81[EUR][1000 genomes]
rs927348	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9401060	0.81[EUR][1000 genomes]
rs9489327	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118606600-118613400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:118607600-118614000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:118607600-118616000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:118607600-118617000	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:118608200-118613400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:118608400-118613400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:118608400-118613400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:118609000-118616400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:118609800-118616600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:118610000-118614800	Weak transcription	Aorta	Aorta
11	chr6:118610200-118617200	Weak transcription	Left Ventricle	heart
12	chr6:118612400-118614600	Enhancers	Fetal Heart	heart
13	chr6:118612800-118618000	Enhancers	Colon Smooth Muscle	Colon
14	chr6:118613200-118614000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
15	chr6:118613200-118616800	Enhancers	Fetal Stomach	stomach

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