Variant report

Variant	rs6940985
Chromosome Location	chr6:118627504-118627505
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11758375	0.84[ASN][1000 genomes]
rs11758402	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11968293	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1572226	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17079898	0.80[ASN][1000 genomes]
rs2065021	0.93[ASN][1000 genomes]
rs4294041	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs55697000	0.82[ASN][1000 genomes]
rs6927800	0.85[ASN][1000 genomes]
rs72965660	0.82[ASN][1000 genomes]
rs7452622	0.81[ASN][1000 genomes]
rs7749263	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118621200-118627800	Weak transcription	Fetal Stomach	stomach
2	chr6:118625000-118631600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:118626400-118628600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:118626400-118629400	Enhancers	Aorta	Aorta
5	chr6:118626800-118629200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:118626800-118629400	Enhancers	Rectal Smooth Muscle	rectum
7	chr6:118627000-118628000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:118627000-118628200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:118627000-118630600	Enhancers	Fetal Brain Male	brain
10	chr6:118627000-118631400	Enhancers	Brain Germinal Matrix	brain
11	chr6:118627000-118631400	Enhancers	Colon Smooth Muscle	Colon
12	chr6:118627200-118627600	Enhancers	Left Ventricle	heart
13	chr6:118627200-118627800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:118627200-118628000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:118627200-118628200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:118627200-118628400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:118627200-118628400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr6:118627200-118628400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr6:118627200-118628600	Enhancers	Brain Angular Gyrus	brain
20	chr6:118627200-118628600	Enhancers	Brain Substantia Nigra	brain
21	chr6:118627200-118628800	Enhancers	Brain Anterior Caudate	brain
22	chr6:118627200-118628800	Enhancers	Brain Hippocampus Middle	brain
23	chr6:118627200-118629200	Enhancers	Fetal Heart	heart
24	chr6:118627400-118627600	Weak transcription	Right Atrium	heart
25	chr6:118627400-118627800	Weak transcription	Stomach Smooth Muscle	stomach
26	chr6:118627400-118628000	Enhancers	H1 Cell Line	embryonic stem cell
27	chr6:118627400-118628200	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr6:118627400-118628800	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr6:118627400-118628800	Weak transcription	Fetal Muscle Leg	muscle
30	chr6:118627400-118628800	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr6:118627400-118629000	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr6:118627400-118629400	Enhancers	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links