Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11758375	0.86[ASN][1000 genomes]
rs11968293	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12212582	0.82[ASN][1000 genomes]
rs1572226	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17079898	0.82[ASN][1000 genomes]
rs188181	0.80[ASN][1000 genomes]
rs2065021	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs283040	0.80[ASN][1000 genomes]
rs283042	0.80[ASN][1000 genomes]
rs283044	0.80[ASN][1000 genomes]
rs283045	0.80[ASN][1000 genomes]
rs283049	0.80[ASN][1000 genomes]
rs283050	0.80[ASN][1000 genomes]
rs283062	0.80[ASN][1000 genomes]
rs283066	0.80[ASN][1000 genomes]
rs4294041	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4946336	0.80[ASN][1000 genomes]
rs55697000	0.84[ASN][1000 genomes]
rs6569009	0.81[ASN][1000 genomes]
rs6927800	0.87[ASN][1000 genomes]
rs6940985	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs72965660	0.84[ASN][1000 genomes]
rs731695	0.81[ASN][1000 genomes]
rs7452622	0.83[ASN][1000 genomes]
rs7749263	0.82[ASN][1000 genomes]
rs927348	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118618600-118626800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:118618800-118621200	Enhancers	Rectal Smooth Muscle	rectum
3	chr6:118619000-118620600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:118619000-118620600	Enhancers	NHLF	lung
5	chr6:118619000-118622400	Enhancers	Colon Smooth Muscle	Colon
6	chr6:118619200-118626400	Weak transcription	Aorta	Aorta
7	chr6:118619400-118621000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:118619400-118621600	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:118620000-118621200	Enhancers	Fetal Stomach	stomach
10	chr6:118620000-118622000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:118620000-118622000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:118620000-118625200	Weak transcription	Fetal Heart	heart
13	chr6:118620200-118620400	Enhancers	Stomach Smooth Muscle	stomach
14	chr6:118620200-118620600	Enhancers	Duodenum Smooth Muscle	Duodenum

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