Variant report

Variant	rs387945
Chromosome Location	chr6:118613313-118613314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11968293	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs12212582	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs1572226	0.85[CHB][hapmap];0.86[ASN][1000 genomes]
rs1690662	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1874081	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs188181	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs190756	0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs1923282	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs2065021	0.80[ASN][1000 genomes]
rs281861	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs281864	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs281867	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[YRI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs281868	0.93[CHB][hapmap]
rs283040	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs283042	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs283044	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs283045	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs283046	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs283047	0.84[ASN][1000 genomes]
rs283049	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs283050	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs283051	0.84[ASN][1000 genomes]
rs283057	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs283061	0.84[ASN][1000 genomes]
rs283062	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs283066	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs283067	0.84[ASN][1000 genomes]
rs283077	0.93[CHB][hapmap]
rs283080	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs283081	0.95[CEU][hapmap];0.93[CHB][hapmap];0.82[YRI][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs283082	0.95[CEU][hapmap];0.93[CHB][hapmap];0.86[EUR][1000 genomes]
rs283083	0.81[YRI][hapmap]
rs283084	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs283085	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs283086	0.95[CEU][hapmap];0.93[CHB][hapmap];0.84[EUR][1000 genomes]
rs283087	0.84[EUR][1000 genomes]
rs283088	0.95[CEU][hapmap];0.93[CHB][hapmap];0.82[EUR][1000 genomes]
rs283091	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[EUR][1000 genomes]
rs369383	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs372237	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.87[EUR][1000 genomes]
rs376875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs387266	0.86[ASN][1000 genomes]
rs397445	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs399844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs413876	0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs414091	1.00[CEU][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs419592	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs422268	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs422833	1.00[CEU][hapmap];0.93[CHB][hapmap];0.84[YRI][hapmap];0.87[EUR][1000 genomes]
rs431115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs445099	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs445566	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs447193	0.95[CEU][hapmap];0.93[CHB][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs450093	0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs4946333	0.93[CHB][hapmap]
rs4946336	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6912208	0.85[CHB][hapmap]
rs89107	0.93[CHB][hapmap]
rs9401060	0.93[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118606600-118613400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:118607600-118614000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:118607600-118616000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:118607600-118617000	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:118608200-118613400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:118608400-118613400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:118608400-118613400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:118609000-118616400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:118609800-118616600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:118610000-118614800	Weak transcription	Aorta	Aorta
11	chr6:118610200-118617200	Weak transcription	Left Ventricle	heart
12	chr6:118612400-118614600	Enhancers	Fetal Heart	heart
13	chr6:118612800-118618000	Enhancers	Colon Smooth Muscle	Colon
14	chr6:118613200-118614000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
15	chr6:118613200-118616800	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links