Variant report
| Variant | rs3951016 |
|---|---|
| Chromosome Location | chr6:118559658-118559659 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs17079898 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs176014 | 0.81[ASN][1000 genomes] |
| rs281861 | 0.84[ASN][1000 genomes] |
| rs281864 | 0.84[ASN][1000 genomes] |
| rs281867 | 0.85[ASN][1000 genomes] |
| rs281868 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs283077 | 0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs283080 | 0.90[ASN][1000 genomes] |
| rs283081 | 0.90[ASN][1000 genomes] |
| rs283082 | 0.89[ASN][1000 genomes] |
| rs283084 | 0.90[ASN][1000 genomes] |
| rs283085 | 0.90[ASN][1000 genomes] |
| rs283086 | 0.92[ASN][1000 genomes] |
| rs283087 | 0.92[ASN][1000 genomes] |
| rs283088 | 0.93[ASN][1000 genomes] |
| rs283091 | 0.93[ASN][1000 genomes] |
| rs372237 | 0.89[ASN][1000 genomes] |
| rs422833 | 0.89[ASN][1000 genomes] |
| rs447193 | 0.90[ASN][1000 genomes] |
| rs4946333 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6569009 | 0.83[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6912208 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs731695 | 0.81[EUR][1000 genomes] |
| rs7749263 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs89107 | 0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs927348 | 0.81[EUR][1000 genomes] |
| rs9401060 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9489327 | 0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530526 | chr6:118027339-118718476 | Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv428153 | chr6:118430517-118586974 | Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1030089 | chr6:118436482-118604516 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv538427 | chr6:118436482-118604516 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv532051 | chr6:118551027-119044197 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:118546400-118564000 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
| 2 | chr6:118553400-118564200 | Weak transcription | Fetal Brain Female | brain |
| 3 | chr6:118558800-118563600 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
