Variant report

Variant	rs1875845
Chromosome Location	chr6:80196848-80196849
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:80193082..80195834-chr6:80196342..80199250,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11756486	0.81[CHB][hapmap]
rs11757993	0.81[CHB][hapmap]
rs1485375	0.82[CHD][hapmap]
rs1485376	0.81[CHD][hapmap]
rs1504364	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16890791	0.84[CEU][hapmap]
rs16890821	0.80[CHB][hapmap]
rs2047897	0.81[CHB][hapmap]
rs2069304	0.81[CHB][hapmap]
rs2575201	0.84[CEU][hapmap]
rs2655668	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2655669	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2655670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2655672	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35548514	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4706791	0.81[CHB][hapmap]
rs7742272	0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.84[ASN][1000 genomes]
rs7755562	0.81[CHB][hapmap]
rs7774418	0.81[CHB][hapmap]
rs9294147	0.88[ASN][1000 genomes]
rs9448738	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv886301	chr6:80111104-80339088	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv886302	chr6:80111104-80355973	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1030126	chr6:80113449-80209165	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1027388	chr6:80113449-80355973	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv830707	chr6:80134625-80325171	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1029259	chr6:80142754-80340332	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	nsv886303	chr6:80147225-80252423	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1875845	ELOVL4	cis	cerebellum	SCAN

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80171200-80220000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:80171600-80226600	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:80178200-80212800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:80178400-80197200	Weak transcription	HSMM	muscle
5	chr6:80179600-80207400	Weak transcription	Ovary	ovary
6	chr6:80179800-80208600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:80179800-80217200	Weak transcription	Aorta	Aorta
8	chr6:80179800-80235000	Weak transcription	HSMMtube	muscle
9	chr6:80180400-80215400	Weak transcription	Fetal Lung	lung
10	chr6:80181400-80222000	Weak transcription	Left Ventricle	heart
11	chr6:80187600-80200400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr6:80188600-80204800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:80188800-80198400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:80189600-80216600	Weak transcription	Fetal Brain Female	brain
15	chr6:80189600-80225200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr6:80190200-80203000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr6:80190200-80234400	Weak transcription	Fetal Intestine Large	intestine
18	chr6:80190800-80197200	Weak transcription	Adipose Nuclei	Adipose
19	chr6:80192400-80223200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:80192400-80226800	Weak transcription	Brain Anterior Caudate	brain
21	chr6:80193200-80197200	Weak transcription	Fetal Brain Male	brain
22	chr6:80193800-80199600	Weak transcription	Psoas Muscle	Psoas
23	chr6:80194200-80204800	Weak transcription	NH-A	brain
24	chr6:80194600-80201200	Weak transcription	Right Ventricle	heart
25	chr6:80194600-80217200	Weak transcription	Brain Germinal Matrix	brain
26	chr6:80194800-80225400	Weak transcription	Colon Smooth Muscle	Colon
27	chr6:80195000-80198600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:80195200-80199000	Weak transcription	Fetal Stomach	stomach
29	chr6:80195400-80235000	Weak transcription	Fetal Muscle Leg	muscle
30	chr6:80195600-80201400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr6:80195800-80199400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:80195800-80218000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:80196400-80199200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr6:80196600-80198200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:80196800-80197000	Enhancers	Brain Substantia Nigra	brain
36	chr6:80196800-80197400	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr6:80196800-80197400	Strong transcription	Fetal Muscle Trunk	muscle
38	chr6:80196800-80198400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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