Variant report

Variant	rs187720982
Chromosome Location	chr11:49041656-49041657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr11:49041643-49041942	HepG2	liver:	n/a	n/a
2	MAFK	chr11:49041650-49041849	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000205044	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759824	chr11:48303671-49185190	Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	esv2757441	chr11:48365757-49068634	Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	esv1828260	chr11:48735614-49162948	Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv427886	chr11:48850348-49185190	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	esv2758268	chr11:48856977-49185190	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv469956	chr11:48922645-49862647	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv897430	chr11:48929921-49042866	ZNF genes & repeats Weak transcription Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv897431	chr11:48929921-49068145	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv897480	chr11:48978778-49042866	Inactive region	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv897481	chr11:48987539-49111467	ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv832145	chr11:49002873-49185190	ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv897482	chr11:49003921-49111467	ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv897483	chr11:49003921-49120367	ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
14	nsv1054955	chr11:49007476-49138758	Enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
15	nsv975174	chr11:49039206-49083950	ZNF genes & repeats	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
16	nsv8817	chr11:49039925-49045868	Inactive region	TF binding region	2 gene(s)	inside rSNPs	diseases
17	esv1814189	chr11:49040580-49045472	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
18	esv18385	chr11:49040762-49045787	Inactive region	TF binding region	2 gene(s)	inside rSNPs	diseases
19	esv1813597	chr11:49040780-49049384	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
20	nsv825883	chr11:49040853-49045472	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
21	esv1813902	chr11:49040966-49045472	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links