Variant report

Variant	rs1877821
Chromosome Location	chr17:63175413-63175414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:63169209..63171609-chr17:63173762..63176573,2	MCF-7	breast:
2	chr17:63173089..63175684-chr17:63187453..63189983,2	MCF-7	breast:
3	chr17:63173795..63175589-chr17:63177989..63180729,2	MCF-7	breast:
4	chr17:63166945..63171394-chr17:63172281..63178092,5	K562	blood:
5	chr17:63174850..63177630-chr17:63180207..63182028,2	K562	blood:
6	chr17:63167995..63174174-chr17:63174484..63177820,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000265883	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10432040	0.80[JPT][hapmap];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12453731	0.91[AMR][1000 genomes]
rs4791222	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4791224	0.89[MEX][hapmap];0.83[TSI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4791225	0.89[CHD][hapmap];0.81[JPT][hapmap];0.89[MEX][hapmap];0.83[TSI][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4791226	0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4791228	0.96[ASN][1000 genomes]
rs60008772	0.80[EUR][1000 genomes]
rs9896245	1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs9897592	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63157000-63179800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr17:63160000-63180400	Weak transcription	Brain Substantia Nigra	brain
3	chr17:63169800-63190800	Weak transcription	Gastric	stomach
4	chr17:63170000-63177600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr17:63170000-63178400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr17:63170000-63180200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr17:63170200-63175600	Enhancers	GM12878-XiMat	blood
8	chr17:63170600-63177600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr17:63170800-63175600	Weak transcription	Primary T cells from cord blood	blood
10	chr17:63170800-63177400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr17:63171000-63175600	Weak transcription	Fetal Kidney	kidney
12	chr17:63171600-63175800	Weak transcription	Spleen	Spleen
13	chr17:63172200-63176000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr17:63173000-63179800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr17:63173400-63179800	Weak transcription	Aorta	Aorta
16	chr17:63173600-63176000	Enhancers	HUVEC	blood vessel
17	chr17:63173600-63180000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr17:63173800-63175800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr17:63173800-63176000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr17:63173800-63176200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr17:63173800-63176600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr17:63174200-63176400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr17:63174400-63176600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr17:63174400-63179800	Weak transcription	NH-A	brain
25	chr17:63174400-63180000	Weak transcription	Osteobl	bone
26	chr17:63174600-63175800	Enhancers	Primary T cells fromperipheralblood	blood
27	chr17:63174600-63176400	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr17:63174800-63175600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr17:63174800-63176400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr17:63174800-63176400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr17:63174800-63176600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr17:63174800-63176800	Enhancers	Fetal Thymus	thymus
33	chr17:63174800-63177600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr17:63175000-63175800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr17:63175000-63176200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr17:63175000-63176200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr17:63175000-63176200	Enhancers	Brain Angular Gyrus	brain
38	chr17:63175000-63176200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr17:63175000-63176200	Enhancers	Fetal Brain Female	brain
40	chr17:63175000-63176400	Enhancers	Brain Anterior Caudate	brain
41	chr17:63175000-63176400	Enhancers	Fetal Brain Male	brain
42	chr17:63175000-63179000	Enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr17:63175000-63179200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr17:63175000-63179200	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr17:63175000-63179400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr17:63175200-63175600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr17:63175200-63175600	Bivalent Enhancer	Fetal Intestine Small	intestine
48	chr17:63175200-63175600	Enhancers	Fetal Muscle Trunk	muscle
49	chr17:63175200-63175600	Enhancers	Fetal Stomach	stomach
50	chr17:63175200-63175800	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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