Variant report

Variant	rs4791226
Chromosome Location	chr17:63178479-63178480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:63178028..63180075-chr17:63181062..63183673,2	K562	blood:
2	chr17:63117639..63119496-chr17:63177929..63179773,2	MCF-7	breast:
3	chr17:63173795..63175589-chr17:63177989..63180729,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000265883	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10432040	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12453731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1877821	0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2056050	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4791222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4791224	0.85[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4791225	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4791228	0.86[ASN][1000 genomes]
rs9896245	0.81[ASN][1000 genomes]
rs9897592	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63157000-63179800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr17:63160000-63180400	Weak transcription	Brain Substantia Nigra	brain
3	chr17:63169800-63190800	Weak transcription	Gastric	stomach
4	chr17:63170000-63180200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr17:63173000-63179800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr17:63173400-63179800	Weak transcription	Aorta	Aorta
7	chr17:63173600-63180000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr17:63174400-63179800	Weak transcription	NH-A	brain
9	chr17:63174400-63180000	Weak transcription	Osteobl	bone
10	chr17:63175000-63179000	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr17:63175000-63179200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr17:63175000-63179200	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr17:63175000-63179400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr17:63175200-63178800	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr17:63175200-63179000	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr17:63175400-63179600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr17:63175400-63179800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr17:63175400-63179800	Weak transcription	Brain Hippocampus Middle	brain
19	chr17:63176000-63179600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr17:63176000-63180000	Weak transcription	NHLF	lung
21	chr17:63176000-63181000	Weak transcription	Fetal Kidney	kidney
22	chr17:63176200-63178800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr17:63176200-63179600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr17:63176200-63179600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr17:63176200-63179800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr17:63176200-63179800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr17:63176200-63180400	Weak transcription	Brain Angular Gyrus	brain
28	chr17:63176200-63180400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr17:63176400-63178600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr17:63176400-63179000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr17:63176400-63179200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr17:63176400-63179600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr17:63176400-63179600	Weak transcription	Fetal Brain Male	brain
34	chr17:63176400-63179800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr17:63176400-63179800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr17:63176400-63179800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr17:63176400-63179800	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr17:63176400-63180000	Weak transcription	Brain Anterior Caudate	brain
39	chr17:63176400-63223800	Weak transcription	Lung	lung
40	chr17:63176600-63179600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr17:63176600-63180600	Enhancers	Primary T cells fromperipheralblood	blood
42	chr17:63176800-63179200	Enhancers	Dnd41	blood
43	chr17:63177200-63179000	Enhancers	Primary B cells from peripheral blood	blood
44	chr17:63177200-63179000	Enhancers	Fetal Thymus	thymus
45	chr17:63177400-63178600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr17:63177400-63179000	Enhancers	Thymus	Thymus
47	chr17:63177400-63179200	Enhancers	Primary hematopoietic stem cells	blood
48	chr17:63177600-63178600	Enhancers	Duodenum Mucosa	Duodenum
49	chr17:63177600-63178800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr17:63177600-63178800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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