Variant report

Variant	rs1878265
Chromosome Location	chr11:83607250-83607251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10751099	0.90[YRI][hapmap]
rs10751100	0.91[CHB][hapmap];0.96[JPT][hapmap];0.91[ASN][1000 genomes]
rs10792696	0.82[EUR][1000 genomes]
rs10792697	0.90[YRI][hapmap]
rs10898166	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10898168	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10898175	0.81[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10898176	0.90[YRI][hapmap]
rs10898177	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10898178	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11233771	0.81[CEU][hapmap]
rs11233774	0.96[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11233776	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs11537255	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11822018	0.82[EUR][1000 genomes]
rs12361034	0.80[CEU][hapmap]
rs12361320	0.81[CEU][hapmap];0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1400315	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1483390	0.90[YRI][hapmap]
rs1483393	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1540096	0.81[EUR][1000 genomes]
rs2090372	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2102784	0.84[ASN][1000 genomes]
rs2138567	0.82[EUR][1000 genomes]
rs28600785	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4468371	0.80[ASN][1000 genomes]
rs4625494	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs7112497	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7112521	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7926185	0.82[EUR][1000 genomes]
rs7927301	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7933375	0.91[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs7933528	0.91[CHB][hapmap];0.87[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7939073	0.97[AFR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs938536	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468765	chr11:83591584-83620940	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv555607	chr11:83591584-83620940	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83606200-83608800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:83606400-83608400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:83606600-83607400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:83606600-83607600	Enhancers	Brain Anterior Caudate	brain
5	chr11:83606600-83607800	Enhancers	Brain Cingulate Gyrus	brain
6	chr11:83606800-83607400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr11:83606800-83608400	Enhancers	Brain Substantia Nigra	brain
8	chr11:83607000-83608000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:83607000-83611400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:83607200-83608400	Enhancers	Brain Hippocampus Middle	brain
11	chr11:83607200-83628800	Weak transcription	Brain Angular Gyrus	brain

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