Variant report

Variant	rs2090372
Chromosome Location	chr11:83610951-83610952
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10751100	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10898166	0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10898168	0.91[ASN][1000 genomes]
rs10898175	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10898177	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10898178	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11233774	0.87[AFR][1000 genomes]
rs11537255	0.93[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1400315	0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1483393	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1878265	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2102784	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28600785	0.87[AFR][1000 genomes]
rs7112497	0.90[ASN][1000 genomes]
rs7112521	0.91[ASN][1000 genomes]
rs7927301	0.86[ASN][1000 genomes]
rs7933375	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7933528	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7939073	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468765	chr11:83591584-83620940	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv555607	chr11:83591584-83620940	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83607000-83611400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:83607200-83628800	Weak transcription	Brain Angular Gyrus	brain
3	chr11:83608400-83620800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:83608400-83634600	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:83608800-83629400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:83609200-83616600	Weak transcription	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links