Variant report

Variant	rs1878513
Chromosome Location	chr2:21420217-21420218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10206521	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11676704	1.00[YRI][hapmap]
rs312956	1.00[YRI][hapmap]
rs384302	0.82[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs385777	0.86[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs387752	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs423836	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs447986	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs477978	0.89[EUR][1000 genomes]
rs491752	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs500195	0.89[EUR][1000 genomes]
rs505403	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs510894	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs523095	0.89[EUR][1000 genomes]
rs536854	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs552658	0.89[EUR][1000 genomes]
rs554871	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs557624	0.86[EUR][1000 genomes]
rs565394	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21416200-21421400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:21416200-21424400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:21416600-21420600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:21417800-21421000	Enhancers	Brain Substantia Nigra	brain
5	chr2:21418600-21422800	Weak transcription	Fetal Intestine Large	intestine
6	chr2:21419400-21421200	Enhancers	Fetal Brain Male	brain
7	chr2:21419600-21421000	Enhancers	Brain Cingulate Gyrus	brain
8	chr2:21419600-21421800	Enhancers	Brain Hippocampus Middle	brain
9	chr2:21419800-21421000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:21420000-21420400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
11	chr2:21420200-21420800	Enhancers	Brain Anterior Caudate	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links