Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10206521	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11676704	1.00[YRI][hapmap]
rs12477249	0.92[ASN][1000 genomes]
rs1878513	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs312956	0.81[CEU][hapmap];0.95[CHB][hapmap];0.80[CHD][hapmap];0.80[MEX][hapmap];1.00[YRI][hapmap]
rs312957	0.81[CEU][hapmap];0.95[CHB][hapmap]
rs312959	0.81[CEU][hapmap];0.95[CHB][hapmap]
rs384302	1.00[YRI][hapmap]
rs385777	0.86[MKK][hapmap];1.00[YRI][hapmap]
rs477978	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs491752	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs500195	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs505403	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs510894	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs523095	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs536854	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs552658	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs554871	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs557624	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs575905	0.81[ASN][1000 genomes]
rs71435600	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs565394	MSGN1	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21404800-21405600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr2:21405000-21405600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr2:21405400-21405600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:21405400-21406600	Enhancers	Placenta	Placenta
5	chr2:21405400-21407000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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