Variant report
| Variant | rs575905 |
|---|---|
| Chromosome Location | chr2:21385538-21385539 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-APOB-10 | chr2:21385443-21385646 | NONHSAT069483 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs12477249 | 0.82[ASN][1000 genomes] |
| rs312942 | 0.88[AFR][1000 genomes] |
| rs312946 | 0.88[AFR][1000 genomes];0.81[ASN][1000 genomes] |
| rs312947 | 0.83[ASN][1000 genomes] |
| rs312948 | 0.88[AFR][1000 genomes];0.80[ASN][1000 genomes] |
| rs312950 | 0.82[ASN][1000 genomes] |
| rs312951 | 0.88[AFR][1000 genomes];0.81[ASN][1000 genomes] |
| rs312952 | 0.88[AFR][1000 genomes];0.83[ASN][1000 genomes] |
| rs312954 | 0.83[ASN][1000 genomes] |
| rs312956 | 0.95[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs312957 | 0.95[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap] |
| rs312959 | 0.95[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.85[ASN][1000 genomes] |
| rs312962 | 0.88[AFR][1000 genomes];0.83[ASN][1000 genomes] |
| rs312963 | 0.88[AFR][1000 genomes];0.83[ASN][1000 genomes] |
| rs312971 | 0.88[AFR][1000 genomes] |
| rs312972 | 0.88[AFR][1000 genomes] |
| rs312973 | 0.82[AFR][1000 genomes] |
| rs312975 | 0.88[AFR][1000 genomes] |
| rs312977 | 0.88[AFR][1000 genomes] |
| rs312978 | 0.82[AFR][1000 genomes] |
| rs477978 | 0.83[ASN][1000 genomes] |
| rs491752 | 0.84[ASN][1000 genomes] |
| rs500195 | 0.83[ASN][1000 genomes] |
| rs510894 | 0.80[ASN][1000 genomes] |
| rs523095 | 0.86[ASN][1000 genomes] |
| rs534100 | 0.88[AFR][1000 genomes] |
| rs536854 | 0.82[ASN][1000 genomes] |
| rs552658 | 0.86[ASN][1000 genomes] |
| rs554871 | 0.83[ASN][1000 genomes] |
| rs557624 | 0.85[ASN][1000 genomes] |
| rs565394 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv873728 | chr2:21250914-21460786 | Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:21383200-21388200 | Weak transcription | HepG2 | liver |
| 2 | chr2:21385400-21385600 | Bivalent Enhancer | Foreskin Melanocyte Primary Cells skin01 | Skin |
