Variant report
| Variant | rs312972 |
|---|---|
| Chromosome Location | chr2:21372590-21372591 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs312942 | 0.94[AFR][1000 genomes];0.94[EUR][1000 genomes] |
| rs312946 | 0.94[AFR][1000 genomes];0.94[EUR][1000 genomes] |
| rs312947 | 0.94[EUR][1000 genomes] |
| rs312948 | 0.94[AFR][1000 genomes];0.94[EUR][1000 genomes] |
| rs312949 | 0.90[EUR][1000 genomes] |
| rs312950 | 0.94[EUR][1000 genomes] |
| rs312951 | 1.00[AFR][1000 genomes];0.90[EUR][1000 genomes] |
| rs312952 | 1.00[AFR][1000 genomes];0.90[EUR][1000 genomes] |
| rs312954 | 0.94[EUR][1000 genomes] |
| rs312955 | 0.90[EUR][1000 genomes] |
| rs312956 | 0.95[EUR][1000 genomes] |
| rs312959 | 0.91[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs312962 | 0.94[AFR][1000 genomes];0.94[EUR][1000 genomes] |
| rs312963 | 0.94[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs312971 | 1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs312973 | 0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs312975 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs312977 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs312978 | 0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs534100 | 0.94[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs563476 | 0.83[AFR][1000 genomes] |
| rs575905 | 0.88[AFR][1000 genomes] |
| rs581998 | 0.94[EUR][1000 genomes] |
| rs645456 | 0.93[EUR][1000 genomes] |
| rs675430 | 0.83[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv873728 | chr2:21250914-21460786 | Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:21372200-21377000 | Weak transcription | HepG2 | liver |
