Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11127270	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12468735	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs312942	0.89[AFR][1000 genomes]
rs312946	0.89[AFR][1000 genomes]
rs312948	0.89[AFR][1000 genomes]
rs312951	0.83[AFR][1000 genomes]
rs312952	0.83[AFR][1000 genomes]
rs312959	0.86[AFR][1000 genomes]
rs312962	0.89[AFR][1000 genomes]
rs312963	0.89[AFR][1000 genomes]
rs312971	0.83[AFR][1000 genomes]
rs312972	0.83[AFR][1000 genomes]
rs312975	0.83[AFR][1000 genomes]
rs312977	0.83[AFR][1000 genomes]
rs534100	0.89[AFR][1000 genomes]
rs565202	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs571468	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs594677	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs634292	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs664894	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs666126	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs675430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs563476	APOB	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21312400-21314800	Weak transcription	HepG2	liver
2	chr2:21312800-21321000	Weak transcription	H9 Cell Line	embryonic stem cell

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