Variant report

Variant	rs645456
Chromosome Location	chr2:21317485-21317486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-APOB-2	chr2:21316935-21317683	XLOC_002012
2	lnc-AC010872.2.1-1	chr2:21316445-21317719	NONHSAT069479
3	lnc-APOB-2	chr2:21316951-21317683	NONHSAT069480

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11676704	1.00[YRI][hapmap]
rs312942	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs312946	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs312947	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs312948	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs312949	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs312950	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs312951	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs312952	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs312954	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs312955	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs312956	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs312957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs312959	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs312962	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs312963	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs312971	0.97[EUR][1000 genomes]
rs312972	0.93[EUR][1000 genomes]
rs312973	0.95[EUR][1000 genomes]
rs312975	0.97[EUR][1000 genomes]
rs312977	0.97[EUR][1000 genomes]
rs312978	0.97[EUR][1000 genomes]
rs384302	1.00[YRI][hapmap]
rs385777	1.00[YRI][hapmap]
rs534100	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs581998	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs664894	0.82[AFR][1000 genomes]
rs666126	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21312800-21321000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:21315800-21318200	Weak transcription	Fetal Intestine Large	intestine
3	chr2:21315800-21320000	Enhancers	HepG2	liver
4	chr2:21315800-21326400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:21316000-21319200	Weak transcription	Adipose Nuclei	Adipose
6	chr2:21316000-21319400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr2:21316400-21317600	Flanking Active TSS	Liver	Liver
8	chr2:21316800-21318200	Weak transcription	Fetal Intestine Small	intestine

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