Variant report

Variant	rs187862755
Chromosome Location	chr6:80658359-80658360
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1032347	chr6:80284809-80694778	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv3475140	chr6:80592690-80679283	Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3475142	chr6:80592789-80679132	Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv933704	chr6:80657182-80674202	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80655600-80659400	Active TSS	Thymus	Thymus
2	chr6:80657800-80658800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr6:80657800-80659000	Weak transcription	Gastric	stomach
4	chr6:80657800-80659200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:80657800-80659800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:80658000-80659000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:80658000-80659000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:80658000-80659000	Enhancers	Dnd41	blood
9	chr6:80658000-80659200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:80658000-80660600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:80658000-80664200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr6:80658200-80658600	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr6:80658200-80658800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:80658200-80659000	Active TSS	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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