Variant report

Variant	rs1880956
Chromosome Location	chr7:80291939-80291940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:80289399-80296964	PBDE	blood:	n/a	n/a

Variant related genes	Relation type
CD36	TF binding region
ENSG00000229436	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10499860	0.81[AMR][1000 genomes]
rs10499861	0.81[AMR][1000 genomes]
rs10499862	0.81[AMR][1000 genomes]
rs12531609	0.81[AMR][1000 genomes]
rs12532729	0.81[AMR][1000 genomes]
rs12533372	0.81[AMR][1000 genomes]
rs12534733	0.81[AMR][1000 genomes]
rs12536106	0.81[AMR][1000 genomes]
rs17154170	0.81[AMR][1000 genomes]
rs17154186	0.81[AMR][1000 genomes]
rs17154209	0.81[AMR][1000 genomes]
rs17154213	0.81[AMR][1000 genomes]
rs17154225	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17154232	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17154239	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1880955	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1969494	0.81[AMR][1000 genomes]
rs3211913	0.84[ASN][1000 genomes]
rs3212165	0.81[AMR][1000 genomes]
rs3800553	0.81[AMR][1000 genomes]
rs3807090	0.81[AMR][1000 genomes]
rs3823475	0.81[AMR][1000 genomes]
rs57312550	0.81[AMR][1000 genomes]
rs59637606	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv948605	chr7:80119690-80298887	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1020682	chr7:80120651-80297697	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv464606	chr7:80177084-80311794	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv607682	chr7:80177084-80311794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv1026688	chr7:80231657-80307236	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv1020745	chr7:80231657-80309495	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv888526	chr7:80240943-80354229	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv888529	chr7:80252518-80295701	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv888535	chr7:80277632-80303350	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv888536	chr7:80287358-80297720	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv888537	chr7:80290528-80303350	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80269400-80305000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr7:80272600-80293600	Weak transcription	Placenta	Placenta
3	chr7:80279000-80306600	Weak transcription	Fetal Intestine Small	intestine
4	chr7:80279800-80303400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr7:80283200-80292600	Genic enhancers	Adipose Nuclei	Adipose
6	chr7:80284600-80309800	Weak transcription	Psoas Muscle	Psoas
7	chr7:80285800-80308200	Weak transcription	Liver	Liver
8	chr7:80288600-80306800	Weak transcription	Lung	lung
9	chr7:80288800-80292000	Weak transcription	Fetal Heart	heart
10	chr7:80288800-80295200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:80288800-80301800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr7:80288800-80308200	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr7:80288800-80309600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr7:80289000-80294400	Weak transcription	Fetal Lung	lung
15	chr7:80289000-80305000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:80289000-80308400	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr7:80290000-80293200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr7:80290000-80294600	Strong transcription	Skeletal Muscle Male	skeletal muscle
19	chr7:80290200-80299200	Strong transcription	Skeletal Muscle Female	skeletal muscle
20	chr7:80291200-80292200	Strong transcription	Left Ventricle	heart
21	chr7:80291600-80292000	Genic enhancers	Right Ventricle	heart
22	chr7:80291600-80292000	ZNF genes & repeats	Spleen	Spleen
23	chr7:80291800-80292200	Strong transcription	Fetal Muscle Leg	muscle
24	chr7:80291800-80299600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr7:80291800-80305400	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links