Variant report

Variant	rs17154170
Chromosome Location	chr7:80242960-80242961
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80239752..80242160-chr7:80242540..80244695,3	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10499856	0.91[AMR][1000 genomes]
rs10499860	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10499861	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10499862	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1205467	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12531218	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12531609	0.89[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12532729	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12533372	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12534733	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12536106	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12536889	0.81[AMR][1000 genomes]
rs12540492	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13222488	0.89[CHB][hapmap]
rs13223899	0.81[AMR][1000 genomes]
rs17154125	0.91[AMR][1000 genomes]
rs17154133	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17154137	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17154186	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17154209	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17154213	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17154225	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1880410	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1880955	0.85[CHB][hapmap]
rs1880956	0.81[AMR][1000 genomes]
rs1969494	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1980331	0.81[AMR][1000 genomes]
rs2886753	0.81[AMR][1000 genomes]
rs3211845	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3212159	0.93[ASN][1000 genomes]
rs3212164	0.93[ASN][1000 genomes]
rs3212165	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34076933	0.81[AMR][1000 genomes]
rs3800553	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3807090	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3823475	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs57312550	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs57345451	0.81[AMR][1000 genomes]
rs57886147	0.98[ASN][1000 genomes]
rs59637606	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7458684	0.81[AMR][1000 genomes]
rs867876	0.81[AMR][1000 genomes]
rs945095	0.81[AMR][1000 genomes]
rs945096	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv948605	chr7:80119690-80298887	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1020682	chr7:80120651-80297697	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv464606	chr7:80177084-80311794	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv607682	chr7:80177084-80311794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv1025144	chr7:80197286-80271841	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1026688	chr7:80231657-80307236	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv1020745	chr7:80231657-80309495	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv888526	chr7:80240943-80354229	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80237600-80243000	Enhancers	Fetal Heart	heart
2	chr7:80239400-80244600	Weak transcription	Right Atrium	heart
3	chr7:80240400-80244600	Weak transcription	Right Ventricle	heart
4	chr7:80240400-80245000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:80240600-80245200	Enhancers	Hela-S3	cervix
6	chr7:80240800-80243000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr7:80240800-80243400	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr7:80240800-80243800	Weak transcription	Left Ventricle	heart
9	chr7:80241000-80246400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:80241000-80251200	Weak transcription	Psoas Muscle	Psoas
11	chr7:80241200-80244200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr7:80241200-80245400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:80241400-80243400	Weak transcription	Adipose Nuclei	Adipose
14	chr7:80241400-80243800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:80241400-80244200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr7:80241600-80243800	Weak transcription	NHDF-Ad	bronchial
17	chr7:80241600-80244000	Weak transcription	HSMMtube	muscle
18	chr7:80241600-80244200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr7:80241800-80243800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr7:80242000-80243000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr7:80242200-80243000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr7:80242200-80243000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr7:80242200-80243200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr7:80242200-80244000	Weak transcription	A549	lung
25	chr7:80242200-80252800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr7:80242600-80243000	Enhancers	Primary hematopoietic stem cells	blood
27	chr7:80242600-80243000	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr7:80242600-80244000	Weak transcription	Osteobl	bone
29	chr7:80242600-80245000	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr7:80242800-80243000	Enhancers	Duodenum Smooth Muscle	Duodenum

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