Variant report

Variant	rs7458684
Chromosome Location	chr7:80209695-80209696
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80198036..80200312-chr7:80208194..80210191,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10499856	0.90[AMR][1000 genomes]
rs10499860	0.81[AMR][1000 genomes]
rs10499861	0.81[AMR][1000 genomes]
rs10499862	0.81[AMR][1000 genomes]
rs12531218	0.90[AMR][1000 genomes]
rs12531609	0.81[AMR][1000 genomes]
rs12532729	0.81[AMR][1000 genomes]
rs12533372	0.81[AMR][1000 genomes]
rs12534733	0.81[AMR][1000 genomes]
rs12536106	0.81[AMR][1000 genomes]
rs12536889	1.00[AMR][1000 genomes]
rs12540492	0.90[AMR][1000 genomes]
rs13223899	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17154125	0.90[AMR][1000 genomes]
rs17154133	0.90[AMR][1000 genomes]
rs17154137	0.90[AMR][1000 genomes]
rs17154170	0.81[AMR][1000 genomes]
rs17154186	0.81[AMR][1000 genomes]
rs17154209	0.81[AMR][1000 genomes]
rs17154213	0.81[AMR][1000 genomes]
rs17154225	0.81[AMR][1000 genomes]
rs1880410	0.90[AMR][1000 genomes]
rs1969494	0.81[AMR][1000 genomes]
rs1980331	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2886753	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3212165	0.81[AMR][1000 genomes]
rs34076933	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3800553	0.81[AMR][1000 genomes]
rs3807090	0.81[AMR][1000 genomes]
rs3823475	0.81[AMR][1000 genomes]
rs57312550	0.81[AMR][1000 genomes]
rs57345451	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs59637606	0.81[AMR][1000 genomes]
rs73373063	0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs867876	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs945095	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs945096	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949205	chr7:80039695-80211200	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv948605	chr7:80119690-80298887	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1020682	chr7:80120651-80297697	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv888525	chr7:80148668-80232471	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv464606	chr7:80177084-80311794	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv607682	chr7:80177084-80311794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv1017381	chr7:80187725-80224314	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1025144	chr7:80197286-80271841	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv525704	chr7:80203718-80236014	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80201000-80210400	Weak transcription	Right Atrium	heart
2	chr7:80209400-80212400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:80209400-80216800	Weak transcription	Primary hematopoietic stem cells	blood

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