Variant report

Variant	rs1880410
Chromosome Location	chr7:80232004-80232005
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10499856	0.86[CHB][hapmap];1.00[AMR][1000 genomes]
rs10499860	0.93[CHD][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10499861	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10499862	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1205467	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12531218	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12531609	0.88[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12532729	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12533372	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12534733	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12536106	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12536889	0.90[AMR][1000 genomes]
rs12540492	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13222488	0.88[CHB][hapmap]
rs13223899	0.90[AMR][1000 genomes]
rs17154125	1.00[AMR][1000 genomes]
rs17154133	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17154137	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17154170	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17154186	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17154209	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17154213	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17154225	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1880955	0.82[CHB][hapmap]
rs1969494	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1980331	0.90[AMR][1000 genomes]
rs2886753	0.90[AMR][1000 genomes]
rs3211845	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3211942	0.91[GIH][hapmap]
rs3212159	0.93[ASN][1000 genomes]
rs3212164	0.93[ASN][1000 genomes]
rs3212165	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34076933	0.90[AMR][1000 genomes]
rs3800553	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3807075	0.91[GIH][hapmap]
rs3807090	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3823475	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs57312550	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs57345451	0.90[AMR][1000 genomes]
rs57886147	0.98[ASN][1000 genomes]
rs59637606	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73373063	0.86[AMR][1000 genomes]
rs7458684	0.90[AMR][1000 genomes]
rs867876	0.90[AMR][1000 genomes]
rs945095	0.90[AMR][1000 genomes]
rs945096	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv948605	chr7:80119690-80298887	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1020682	chr7:80120651-80297697	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv888525	chr7:80148668-80232471	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv464606	chr7:80177084-80311794	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv607682	chr7:80177084-80311794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv1025144	chr7:80197286-80271841	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv525704	chr7:80203718-80236014	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1026688	chr7:80231657-80307236	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv1020745	chr7:80231657-80309495	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80227400-80238200	Weak transcription	Small Intestine	intestine
2	chr7:80230200-80234800	Weak transcription	Fetal Intestine Small	intestine
3	chr7:80230200-80237000	Weak transcription	Gastric	stomach
4	chr7:80231200-80233400	Active TSS	Psoas Muscle	Psoas
5	chr7:80231200-80236400	Active TSS	Right Atrium	heart
6	chr7:80231400-80233600	Active TSS	Right Ventricle	heart
7	chr7:80231400-80235800	Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr7:80231600-80232800	Active TSS	Left Ventricle	heart
9	chr7:80231600-80233800	Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr7:80231800-80232200	Weak transcription	Fetal Lung	lung
11	chr7:80231800-80233800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:80231800-80234800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr7:80231800-80236600	Active TSS	Adipose Nuclei	Adipose
14	chr7:80231800-80240200	Weak transcription	Fetal Muscle Leg	muscle
15	chr7:80232000-80236000	Weak transcription	Fetal Heart	heart

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