Variant report

Variant	rs3212159
Chromosome Location	chr7:80273143-80273144
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr7:80272691-80273827	ECC-1	luminal epithelium:	n/a	n/a
2	CEBPB	chr7:80272854-80273198	ECC-1	luminal epithelium:	n/a	n/a
3	FOXM1	chr7:80272754-80273246	MCF-7	breast:	n/a	n/a
4	ZNF217	chr7:80272853-80273438	MCF-7	breast:	n/a	n/a
5	TEAD4	chr7:80272862-80273394	MCF-7	breast:	n/a	n/a
6	NFIC	chr7:80272735-80273963	ECC-1	luminal epithelium:	n/a	n/a
7	EP300	chr7:80272799-80273359	MCF-7	breast:	n/a	n/a
8	GATA3	chr7:80272968-80273181	MCF-7	breast:	n/a	n/a
9	ELF1	chr7:80272765-80273397	MCF-7	breast:	n/a	chr7:80272914-80272925
10	FOXM1	chr7:80272677-80274021	ECC-1	luminal epithelium:	n/a	n/a
11	GATA3	chr7:80272843-80273486	MCF-7	breast:	n/a	chr7:80273297-80273313
12	TCF7L2	chr7:80272912-80273387	MCF-7	breast:	n/a	n/a
13	TEAD4	chr7:80272755-80273806	ECC-1	luminal epithelium:	n/a	chr7:80272797-80272806
14	RUNX3	chr7:80272883-80273269	GM12878	blood:	n/a	n/a
15	SIN3AK20	chr7:80272716-80273545	MCF-7	breast:	n/a	n/a
16	GATA3	chr7:80272859-80273276	MCF-7	breast:	n/a	n/a
17	HDAC2	chr7:80272924-80273365	MCF-7	breast:	n/a	n/a
18	FOXM1	chr7:80272717-80273527	MCF-7	breast:	n/a	n/a
19	GATA3	chr7:80272853-80273227	T-47D	breast:	n/a	n/a
20	TEAD4	chr7:80272813-80273959	ECC-1	luminal epithelium:	n/a	n/a
21	GATA3	chr7:80272769-80273314	T-47D	breast:	n/a	chr7:80273297-80273313
22	GATA1	chr7:80272323-80273659	PBDE	blood:	n/a	chr7:80273297-80273313 chr7:80272725-80272742
23	CEBPB	chr7:80272790-80273832	ECC-1	luminal epithelium:	n/a	n/a
24	NR2F2	chr7:80272863-80273336	MCF-7	breast:	n/a	n/a
25	GATA3	chr7:80272486-80273693	MCF-7	breast:	n/a	chr7:80273297-80273313 chr7:80272725-80272742
26	CEBPB	chr7:80272830-80273384	MCF-7	breast:	n/a	n/a
27	FOXM1	chr7:80272631-80274017	ECC-1	luminal epithelium:	n/a	n/a
28	EP300	chr7:80272705-80274027	ECC-1	luminal epithelium:	n/a	chr7:80273947-80273961
29	TEAD4	chr7:80272907-80273322	MCF-7	breast:	n/a	n/a
30	NR2F2	chr7:80272729-80273402	MCF-7	breast:	n/a	n/a
31	CEBPB	chr7:80272811-80273219	MCF-7	breast:	n/a	n/a
32	JUND	chr7:80272759-80273400	MCF-7	breast:	n/a	n/a
33	EP300	chr7:80272852-80273950	ECC-1	luminal epithelium:	n/a	n/a
34	HDAC2	chr7:80272892-80273287	MCF-7	breast:	n/a	n/a
35	SPI1	chr7:80272754-80273162	HL-60	blood:	n/a	n/a
36	POLR2A	chr7:80272607-80273366	SK-N-MC	brain:	n/a	n/a

Variant related genes	Relation type
CD36	TF binding region

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10499860	0.95[ASN][1000 genomes]
rs10499861	1.00[ASN][1000 genomes]
rs10499862	0.95[ASN][1000 genomes]
rs1205467	0.93[ASN][1000 genomes]
rs12531218	0.93[ASN][1000 genomes]
rs12531609	0.93[ASN][1000 genomes]
rs12532729	0.93[ASN][1000 genomes]
rs12533372	1.00[ASN][1000 genomes]
rs12534733	0.95[ASN][1000 genomes]
rs12536106	1.00[ASN][1000 genomes]
rs12540492	0.96[ASN][1000 genomes]
rs17154133	0.98[ASN][1000 genomes]
rs17154137	0.93[ASN][1000 genomes]
rs17154170	0.93[ASN][1000 genomes]
rs17154186	0.95[ASN][1000 genomes]
rs17154209	1.00[ASN][1000 genomes]
rs17154213	0.95[ASN][1000 genomes]
rs17154225	0.98[ASN][1000 genomes]
rs1880410	0.93[ASN][1000 genomes]
rs1969494	0.95[ASN][1000 genomes]
rs3211805	1.00[EUR][1000 genomes]
rs3211808	1.00[EUR][1000 genomes]
rs3211811	1.00[EUR][1000 genomes]
rs3211812	1.00[EUR][1000 genomes]
rs3211814	1.00[EUR][1000 genomes]
rs3211824	1.00[EUR][1000 genomes]
rs3211845	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3211878	1.00[EUR][1000 genomes]
rs3211884	1.00[EUR][1000 genomes]
rs3211891	1.00[EUR][1000 genomes]
rs3211895	1.00[EUR][1000 genomes]
rs3212164	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3212165	0.93[ASN][1000 genomes]
rs3800553	0.95[ASN][1000 genomes]
rs3807090	0.95[ASN][1000 genomes]
rs3823475	0.95[ASN][1000 genomes]
rs4422722	1.00[EUR][1000 genomes]
rs57312550	0.95[ASN][1000 genomes]
rs57886147	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59637606	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv948605	chr7:80119690-80298887	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1020682	chr7:80120651-80297697	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv464606	chr7:80177084-80311794	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv607682	chr7:80177084-80311794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv1026688	chr7:80231657-80307236	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv1020745	chr7:80231657-80309495	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv888526	chr7:80240943-80354229	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv888527	chr7:80248029-80279460	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv888528	chr7:80252518-80280117	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv888529	chr7:80252518-80295701	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1027411	chr7:80256255-80276756	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1032295	chr7:80256738-80276756	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv2761341	chr7:80256738-80276768	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv888530	chr7:80258564-80279460	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv888531	chr7:80258564-80280117	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv888532	chr7:80258564-80282636	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv464607	chr7:80262830-80288854	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	nsv607683	chr7:80262830-80288854	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
21	nsv888533	chr7:80272568-80289765	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80260400-80273400	Weak transcription	Small Intestine	intestine
2	chr7:80267600-80273200	Active TSS	Adipose Nuclei	Adipose
3	chr7:80269400-80305000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr7:80270600-80274000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr7:80271200-80274200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:80271400-80275400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:80272000-80280400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:80272200-80273200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
9	chr7:80272200-80273600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:80272200-80274200	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr7:80272200-80274200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr7:80272400-80273800	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr7:80272600-80273600	Enhancers	NHEK	skin
14	chr7:80272600-80273800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:80272600-80274200	Active TSS	Right Atrium	heart
16	chr7:80272600-80275400	Weak transcription	Liver	Liver
17	chr7:80272600-80293600	Weak transcription	Placenta	Placenta
18	chr7:80272800-80273200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
19	chr7:80272800-80273200	Enhancers	NHDF-Ad	bronchial
20	chr7:80272800-80273400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr7:80272800-80273400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr7:80272800-80273400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr7:80272800-80273400	Enhancers	HSMM	muscle
24	chr7:80272800-80273600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr7:80272800-80273600	Enhancers	Right Ventricle	heart
26	chr7:80272800-80282600	Weak transcription	Fetal Heart	heart
27	chr7:80273000-80273200	Active TSS	Psoas Muscle	Psoas
28	chr7:80273000-80275400	Weak transcription	Fetal Intestine Small	intestine
29	chr7:80273000-80275400	Weak transcription	Left Ventricle	heart
30	chr7:80273000-80275600	Weak transcription	HepG2	liver

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