Variant report

Variant	rs3212164
Chromosome Location	chr7:80273732-80273733
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:17)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:17 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr7:80272691-80273827	ECC-1	luminal epithelium:	n/a	n/a
2	ESR1	chr7:80273278-80273757	ECC-1	luminal epithelium:	n/a	n/a
3	NFIC	chr7:80272735-80273963	ECC-1	luminal epithelium:	n/a	n/a
4	NR3C1	chr7:80273278-80273732	ECC-1	luminal epithelium:	n/a	n/a
5	FOXM1	chr7:80272677-80274021	ECC-1	luminal epithelium:	n/a	n/a
6	MAX	chr7:80273255-80273782	ECC-1	luminal epithelium:	n/a	n/a
7	TEAD4	chr7:80272755-80273806	ECC-1	luminal epithelium:	n/a	chr7:80272797-80272806
8	ESR1	chr7:80273183-80273762	ECC-1	luminal epithelium:	n/a	n/a
9	NFIC	chr7:80273170-80273816	ECC-1	luminal epithelium:	n/a	n/a
10	ESR1	chr7:80273228-80273800	ECC-1	luminal epithelium:	n/a	n/a
11	SRF	chr7:80273263-80273808	ECC-1	luminal epithelium:	n/a	n/a
12	TEAD4	chr7:80272813-80273959	ECC-1	luminal epithelium:	n/a	n/a
13	CEBPB	chr7:80272790-80273832	ECC-1	luminal epithelium:	n/a	n/a
14	FOXM1	chr7:80272631-80274017	ECC-1	luminal epithelium:	n/a	n/a
15	EP300	chr7:80272705-80274027	ECC-1	luminal epithelium:	n/a	chr7:80273947-80273961
16	TCF12	chr7:80273165-80273822	ECC-1	luminal epithelium:	n/a	n/a
17	EP300	chr7:80272852-80273950	ECC-1	luminal epithelium:	n/a	n/a

No data

Variant related genes	Relation type
CD36	TF binding region

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10499860	0.95[ASN][1000 genomes]
rs10499861	1.00[ASN][1000 genomes]
rs10499862	0.95[ASN][1000 genomes]
rs1205467	0.93[ASN][1000 genomes]
rs12531218	0.93[ASN][1000 genomes]
rs12531609	0.93[ASN][1000 genomes]
rs12532729	0.93[ASN][1000 genomes]
rs12533372	1.00[ASN][1000 genomes]
rs12534733	0.95[ASN][1000 genomes]
rs12536106	1.00[ASN][1000 genomes]
rs12540492	0.96[ASN][1000 genomes]
rs17154133	0.98[ASN][1000 genomes]
rs17154137	0.93[ASN][1000 genomes]
rs17154170	0.93[ASN][1000 genomes]
rs17154186	0.95[ASN][1000 genomes]
rs17154209	1.00[ASN][1000 genomes]
rs17154213	0.95[ASN][1000 genomes]
rs17154225	0.98[ASN][1000 genomes]
rs1880410	0.93[ASN][1000 genomes]
rs1969494	0.95[ASN][1000 genomes]
rs3211805	1.00[EUR][1000 genomes]
rs3211808	1.00[EUR][1000 genomes]
rs3211811	1.00[EUR][1000 genomes]
rs3211812	1.00[EUR][1000 genomes]
rs3211814	1.00[EUR][1000 genomes]
rs3211824	1.00[EUR][1000 genomes]
rs3211845	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3211878	1.00[EUR][1000 genomes]
rs3211884	1.00[EUR][1000 genomes]
rs3211891	1.00[EUR][1000 genomes]
rs3211895	1.00[EUR][1000 genomes]
rs3212159	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3212165	0.93[ASN][1000 genomes]
rs3800553	0.95[ASN][1000 genomes]
rs3807090	0.95[ASN][1000 genomes]
rs3823475	0.95[ASN][1000 genomes]
rs4422722	1.00[EUR][1000 genomes]
rs57312550	0.95[ASN][1000 genomes]
rs57886147	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59637606	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv948605	chr7:80119690-80298887	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1020682	chr7:80120651-80297697	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv464606	chr7:80177084-80311794	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv607682	chr7:80177084-80311794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv1026688	chr7:80231657-80307236	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv1020745	chr7:80231657-80309495	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv888526	chr7:80240943-80354229	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv888527	chr7:80248029-80279460	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv888528	chr7:80252518-80280117	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv888529	chr7:80252518-80295701	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1027411	chr7:80256255-80276756	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1032295	chr7:80256738-80276756	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv2761341	chr7:80256738-80276768	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv888530	chr7:80258564-80279460	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv888531	chr7:80258564-80280117	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv888532	chr7:80258564-80282636	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv464607	chr7:80262830-80288854	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	nsv607683	chr7:80262830-80288854	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
21	nsv888533	chr7:80272568-80289765	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80269400-80305000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr7:80270600-80274000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr7:80271200-80274200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:80271400-80275400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:80272000-80280400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:80272200-80274200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr7:80272200-80274200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr7:80272400-80273800	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr7:80272600-80273800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:80272600-80274200	Active TSS	Right Atrium	heart
11	chr7:80272600-80275400	Weak transcription	Liver	Liver
12	chr7:80272600-80293600	Weak transcription	Placenta	Placenta
13	chr7:80272800-80282600	Weak transcription	Fetal Heart	heart
14	chr7:80273000-80275400	Weak transcription	Fetal Intestine Small	intestine
15	chr7:80273000-80275400	Weak transcription	Left Ventricle	heart
16	chr7:80273000-80275600	Weak transcription	HepG2	liver
17	chr7:80273200-80274200	Genic enhancers	Primary monocytes fromperipheralblood	blood
18	chr7:80273200-80275200	Weak transcription	NHDF-Ad	bronchial
19	chr7:80273200-80275800	Weak transcription	Psoas Muscle	Psoas
20	chr7:80273400-80274200	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr7:80273400-80274400	Transcr. at gene 5' and 3'	Adipose Nuclei	Adipose
22	chr7:80273600-80273800	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr7:80273600-80275000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr7:80273600-80275600	Weak transcription	Right Ventricle	heart
25	chr7:80273600-80278400	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links