Variant report

Variant	rs3211845
Chromosome Location	chr7:80282899-80282900
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10499860	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10499861	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10499862	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1205467	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12531218	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12531609	0.89[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12532729	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12533372	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12534733	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12536106	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12540492	0.96[ASN][1000 genomes]
rs13222488	0.89[CHB][hapmap]
rs17154133	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17154137	0.93[ASN][1000 genomes]
rs17154170	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17154186	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17154209	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17154213	0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17154225	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1880410	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1880955	0.85[CHB][hapmap]
rs1969494	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3211805	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3211808	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3211811	0.85[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3211812	0.85[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3211814	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3211824	0.85[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3211878	0.85[YRI][hapmap];1.00[EUR][1000 genomes]
rs3211884	0.85[YRI][hapmap];1.00[EUR][1000 genomes]
rs3211888	0.85[YRI][hapmap];1.00[AFR][1000 genomes]
rs3211891	0.85[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3211895	0.85[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3212159	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3212164	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3212165	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3800553	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3807090	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3823475	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4422722	1.00[EUR][1000 genomes]
rs57312550	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57886147	0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59637606	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv948605	chr7:80119690-80298887	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1020682	chr7:80120651-80297697	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv464606	chr7:80177084-80311794	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv607682	chr7:80177084-80311794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv1026688	chr7:80231657-80307236	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv1020745	chr7:80231657-80309495	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv888526	chr7:80240943-80354229	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv888529	chr7:80252518-80295701	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv464607	chr7:80262830-80288854	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv607683	chr7:80262830-80288854	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv888533	chr7:80272568-80289765	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv888535	chr7:80277632-80303350	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80269400-80305000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr7:80272600-80293600	Weak transcription	Placenta	Placenta
3	chr7:80275800-80284200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr7:80275800-80288400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:80276200-80284200	Weak transcription	Psoas Muscle	Psoas
6	chr7:80276200-80285600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr7:80276200-80286400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr7:80277000-80284200	Weak transcription	Right Ventricle	heart
9	chr7:80277200-80284200	Weak transcription	Left Ventricle	heart
10	chr7:80277600-80284400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr7:80278600-80288200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr7:80279000-80306600	Weak transcription	Fetal Intestine Small	intestine
13	chr7:80279800-80303400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr7:80280200-80284200	Weak transcription	Right Atrium	heart
15	chr7:80281200-80287200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr7:80282000-80283200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr7:80282200-80291800	Weak transcription	Fetal Muscle Leg	muscle
18	chr7:80282400-80283200	Transcr. at gene 5' and 3'	Adipose Nuclei	Adipose
19	chr7:80282600-80283000	Enhancers	Fetal Heart	heart
20	chr7:80282800-80284000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr7:80282800-80291000	Weak transcription	Fetal Muscle Trunk	muscle

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