Variant report

Variant	rs3807075
Chromosome Location	chr7:80302196-80302197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BRCA1	chr7:80302176-80302364	Hela-S3	cervix:	n/a	n/a
2	GATA3	chr7:80302028-80302536	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
CD36	TF binding region

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10499861	0.91[GIH][hapmap]
rs11574716	1.00[JPT][hapmap]
rs11574729	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11981022	0.94[ASN][1000 genomes]
rs12531218	0.91[GIH][hapmap]
rs12534733	0.91[GIH][hapmap]
rs17154133	0.91[GIH][hapmap]
rs17154186	0.91[GIH][hapmap]
rs17154258	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17154304	0.97[ASN][1000 genomes]
rs17154309	0.97[ASN][1000 genomes]
rs17154312	0.97[ASN][1000 genomes]
rs17154316	0.97[ASN][1000 genomes]
rs17154320	0.97[ASN][1000 genomes]
rs17154324	0.94[ASN][1000 genomes]
rs1880410	0.91[GIH][hapmap]
rs3211942	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[ASN][1000 genomes]
rs3807073	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3807076	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3807077	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3817556	1.00[ASN][1000 genomes]
rs57969381	0.97[ASN][1000 genomes]
rs6953487	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs73384976	0.97[ASN][1000 genomes]
rs73384979	0.97[ASN][1000 genomes]
rs73384982	0.97[ASN][1000 genomes]
rs73386811	0.83[ASN][1000 genomes]
rs7810964	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv464606	chr7:80177084-80311794	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv607682	chr7:80177084-80311794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv1026688	chr7:80231657-80307236	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv1020745	chr7:80231657-80309495	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv888526	chr7:80240943-80354229	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv888535	chr7:80277632-80303350	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv888537	chr7:80290528-80303350	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv888540	chr7:80292449-80303350	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv888541	chr7:80293814-80303350	Enhancers Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv888543	chr7:80293916-80302196	Genic enhancers Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv888544	chr7:80293916-80303350	Strong transcription Genic enhancers Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv888545	chr7:80294419-80302196	Enhancers Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv888546	chr7:80294681-80303350	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv888547	chr7:80296054-80311794	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80269400-80305000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr7:80279000-80306600	Weak transcription	Fetal Intestine Small	intestine
3	chr7:80279800-80303400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:80284600-80309800	Weak transcription	Psoas Muscle	Psoas
5	chr7:80285800-80308200	Weak transcription	Liver	Liver
6	chr7:80288600-80306800	Weak transcription	Lung	lung
7	chr7:80288800-80308200	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr7:80288800-80309600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:80289000-80305000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:80289000-80308400	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr7:80291800-80305400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr7:80292000-80305200	Weak transcription	Right Ventricle	heart
13	chr7:80292000-80307400	Weak transcription	Spleen	Spleen
14	chr7:80292200-80303600	Weak transcription	Fetal Muscle Leg	muscle
15	chr7:80293600-80304400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:80294200-80305800	Strong transcription	Adipose Nuclei	Adipose
17	chr7:80296000-80309000	Weak transcription	Fetal Heart	heart
18	chr7:80296400-80302400	Weak transcription	Placenta	Placenta
19	chr7:80296400-80315800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:80299200-80302200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr7:80300400-80302600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr7:80300600-80305000	Weak transcription	Left Ventricle	heart

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