Variant report

Variant	rs17154304
Chromosome Location	chr7:80310223-80310224
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80057501..80059024-chr7:80309987..80311233,7	MCF-7	breast:
2	chr7:80309635..80311970-chr7:80327304..80328967,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11574716	0.93[JPT][hapmap]
rs11574729	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11981022	0.97[ASN][1000 genomes]
rs17154258	0.93[JPT][hapmap]
rs17154309	1.00[ASN][1000 genomes]
rs17154312	1.00[ASN][1000 genomes]
rs17154316	1.00[ASN][1000 genomes]
rs17154320	1.00[ASN][1000 genomes]
rs17154324	0.97[ASN][1000 genomes]
rs3211942	1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs3807073	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3807075	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3807076	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3807077	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3817556	0.97[ASN][1000 genomes]
rs57969381	1.00[ASN][1000 genomes]
rs6953487	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs73384976	1.00[ASN][1000 genomes]
rs73384979	1.00[ASN][1000 genomes]
rs73384982	1.00[ASN][1000 genomes]
rs73386811	0.86[ASN][1000 genomes]
rs7810964	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv464606	chr7:80177084-80311794	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv607682	chr7:80177084-80311794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv888526	chr7:80240943-80354229	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv888547	chr7:80296054-80311794	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80296400-80315800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:80303400-80311200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:80307600-80310600	Enhancers	Fetal Intestine Large	intestine
4	chr7:80308800-80310600	Enhancers	Duodenum Mucosa	Duodenum
5	chr7:80309000-80310600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr7:80309000-80310800	Enhancers	Fetal Heart	heart
7	chr7:80309200-80310400	Weak transcription	HepG2	liver
8	chr7:80309600-80311200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:80310000-80310800	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr7:80310200-80310400	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr7:80310200-80310600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:80310200-80310600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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