Variant report

Variant	rs73384982
Chromosome Location	chr7:80316347-80316348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11574729	0.98[ASN][1000 genomes]
rs11981022	0.97[ASN][1000 genomes]
rs17154304	1.00[ASN][1000 genomes]
rs17154309	1.00[ASN][1000 genomes]
rs17154312	1.00[ASN][1000 genomes]
rs17154316	1.00[ASN][1000 genomes]
rs17154320	1.00[ASN][1000 genomes]
rs17154324	0.97[ASN][1000 genomes]
rs3211942	0.97[ASN][1000 genomes]
rs3807073	0.97[ASN][1000 genomes]
rs3807075	0.97[ASN][1000 genomes]
rs3807076	0.97[ASN][1000 genomes]
rs3807077	0.97[ASN][1000 genomes]
rs3817556	0.97[ASN][1000 genomes]
rs57969381	1.00[ASN][1000 genomes]
rs6953487	0.97[ASN][1000 genomes]
rs73384976	1.00[ASN][1000 genomes]
rs73384979	1.00[ASN][1000 genomes]
rs73386811	0.86[ASN][1000 genomes]
rs7810964	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv888526	chr7:80240943-80354229	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80315600-80316600	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr7:80315800-80316400	Enhancers	HMEC	breast
3	chr7:80315800-80316400	Enhancers	NHDF-Ad	bronchial
4	chr7:80315800-80316400	Enhancers	NHEK	skin
5	chr7:80315800-80316600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:80315800-80316600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr7:80315800-80316600	Enhancers	HSMMtube	muscle
8	chr7:80316200-80316600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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