Variant report

Variant	rs10499856
Chromosome Location	chr7:80227048-80227049
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr7:80226848-80227621	SK-N-SH	brain:	n/a	n/a
2	TCF12	chr7:80226914-80227638	SK-N-SH	brain:	n/a	n/a
3	PBX3	chr7:80227032-80227488	SK-N-SH	brain:	n/a	n/a
4	GATA3	chr7:80226942-80227563	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80226468..80229283-chr7:80231335..80233921,2	K562	blood:

Variant related genes	Relation type
CD36	TF binding region
ENSG00000135218	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10499860	0.91[AMR][1000 genomes]
rs10499861	0.86[CHB][hapmap];0.91[AMR][1000 genomes]
rs10499862	0.91[AMR][1000 genomes]
rs12531218	0.86[CHB][hapmap];1.00[AMR][1000 genomes]
rs12531609	0.91[AMR][1000 genomes]
rs12532729	0.86[CHB][hapmap];0.91[AMR][1000 genomes]
rs12533372	0.91[AMR][1000 genomes]
rs12534733	0.86[CHB][hapmap];0.91[AMR][1000 genomes]
rs12536106	0.91[AMR][1000 genomes]
rs12536889	0.90[AMR][1000 genomes]
rs12540492	1.00[AMR][1000 genomes]
rs13223899	0.90[AMR][1000 genomes]
rs17154125	1.00[AMR][1000 genomes]
rs17154133	0.86[CHB][hapmap];1.00[AMR][1000 genomes]
rs17154137	1.00[AMR][1000 genomes]
rs17154170	0.91[AMR][1000 genomes]
rs17154186	0.86[CHB][hapmap];0.91[AMR][1000 genomes]
rs17154209	0.91[AMR][1000 genomes]
rs17154213	0.91[AMR][1000 genomes]
rs17154225	0.91[AMR][1000 genomes]
rs1880410	0.86[CHB][hapmap];1.00[AMR][1000 genomes]
rs1969494	0.91[AMR][1000 genomes]
rs1980331	0.90[AMR][1000 genomes]
rs2886753	0.90[AMR][1000 genomes]
rs3212165	0.91[AMR][1000 genomes]
rs34076933	0.90[AMR][1000 genomes]
rs3800553	0.91[AMR][1000 genomes]
rs3807090	0.86[CHB][hapmap];0.91[AMR][1000 genomes]
rs3823475	0.91[AMR][1000 genomes]
rs57312550	0.91[AMR][1000 genomes]
rs57345451	0.90[AMR][1000 genomes]
rs59637606	0.91[AMR][1000 genomes]
rs73373063	0.86[AMR][1000 genomes]
rs7458684	0.90[AMR][1000 genomes]
rs867876	0.90[AMR][1000 genomes]
rs945095	0.90[AMR][1000 genomes]
rs945096	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv948605	chr7:80119690-80298887	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1020682	chr7:80120651-80297697	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv888525	chr7:80148668-80232471	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv464606	chr7:80177084-80311794	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv607682	chr7:80177084-80311794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv1025144	chr7:80197286-80271841	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv525704	chr7:80203718-80236014	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80219400-80229800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr7:80223800-80229400	Weak transcription	Stomach Mucosa	stomach
3	chr7:80223800-80231400	Weak transcription	Right Ventricle	heart
4	chr7:80224000-80229400	Weak transcription	Psoas Muscle	Psoas
5	chr7:80224200-80229800	Weak transcription	Left Ventricle	heart
6	chr7:80225600-80227400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:80225600-80229400	Weak transcription	Right Atrium	heart
8	chr7:80226000-80227800	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr7:80226400-80227400	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr7:80226400-80227400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr7:80226400-80231400	Weak transcription	Fetal Muscle Leg	muscle
12	chr7:80226600-80227400	Enhancers	Fetal Heart	heart
13	chr7:80226600-80227600	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr7:80226800-80229000	Weak transcription	Fetal Lung	lung
15	chr7:80226800-80231200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:80227000-80227600	Enhancers	Adipose Nuclei	Adipose

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