Variant report

Variant	rs188131888
Chromosome Location	chr17:33673005-33673006
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv574741	chr17:33552275-33827134	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
5	nsv457724	chr17:33609247-33691409	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv574742	chr17:33609247-33691409	Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv457725	chr17:33664044-33774159	Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv574743	chr17:33664044-33774159	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv515566	chr17:33664818-33768199	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv1066569	chr17:33671156-33758566	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv1062610	chr17:33671466-33758566	Weak transcription Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	esv3446899	chr17:33672718-33673042	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33672000-33674200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
2	chr17:33672200-33674200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr17:33672400-33673200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr17:33672400-33673200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
5	chr17:33672400-33673600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
6	chr17:33672400-33673800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
7	chr17:33672400-33674000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
8	chr17:33672400-33674000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
9	chr17:33672400-33674000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr17:33672400-33674000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
11	chr17:33672400-33674000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
12	chr17:33672400-33674000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
13	chr17:33672400-33674000	Flanking Active TSS	Primary B cells from cord blood	blood
14	chr17:33672400-33674000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
15	chr17:33672400-33674000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr17:33672400-33674000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
17	chr17:33672400-33674000	Active TSS	Right Atrium	heart
18	chr17:33672400-33674200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
19	chr17:33672400-33674200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
20	chr17:33672400-33674200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
21	chr17:33672400-33674200	Flanking Active TSS	Adipose Nuclei	Adipose
22	chr17:33672400-33674400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
23	chr17:33672600-33673200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr17:33672600-33673200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr17:33672600-33673200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr17:33672600-33673200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
27	chr17:33672600-33673200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
28	chr17:33672600-33673200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
29	chr17:33672600-33673200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
30	chr17:33672600-33673200	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
31	chr17:33672600-33673200	Bivalent Enhancer	HMEC	breast
32	chr17:33672600-33673200	Flanking Active TSS	NHDF-Ad	bronchial
33	chr17:33672600-33673200	Flanking Bivalent TSS/Enh	Osteobl	bone
34	chr17:33672600-33673400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
35	chr17:33672600-33673400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
36	chr17:33672600-33673800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr17:33672600-33673800	Flanking Active TSS	Primary hematopoietic stem cells	blood
38	chr17:33672600-33673800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr17:33672600-33673800	Active TSS	Colon Smooth Muscle	Colon
40	chr17:33672600-33673800	Flanking Active TSS	Placenta	Placenta
41	chr17:33672600-33674000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
42	chr17:33672600-33674000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
43	chr17:33672600-33674000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
44	chr17:33672600-33674000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr17:33672600-33674000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr17:33672600-33674000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr17:33672600-33674000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
48	chr17:33672600-33674000	Active TSS	Aorta	Aorta
49	chr17:33672600-33674000	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
50	chr17:33672600-33674000	Active TSS	Right Ventricle	heart

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