Variant report

Variant	rs1882282
Chromosome Location	chr12:67846129-67846130
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:67844072..67846327-chr12:68042161..68044041,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000127334	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10506549	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10878616	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11176738	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11176739	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11176744	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12828359	0.84[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1882280	0.82[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1882283	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1920430	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35583684	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4913247	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4913248	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4913249	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4913323	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4913324	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67939426	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7132295	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7132301	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7298082	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7312115	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7312371	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7312608	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7958866	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1054111	chr12:67556780-67865542	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1882282	CAND1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67835600-67849000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:67843400-67847400	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr12:67843600-67847600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr12:67843800-67846800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr12:67843800-67849200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr12:67844000-67846600	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr12:67844000-67849200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr12:67844200-67846600	Weak transcription	Thymus	Thymus
9	chr12:67844600-67847800	ZNF genes & repeats	GM12878-XiMat	blood
10	chr12:67844600-67851600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr12:67845000-67846200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr12:67845000-67846400	Enhancers	Fetal Heart	heart
13	chr12:67845200-67846200	Enhancers	Primary B cells from cord blood	blood
14	chr12:67845200-67846600	Enhancers	Primary T cells fromperipheralblood	blood
15	chr12:67845400-67850400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr12:67845600-67846200	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr12:67845600-67846800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr12:67845600-67846800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr12:67845800-67846200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr12:67845800-67846400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr12:67845800-67846600	Enhancers	Primary B cells from peripheral blood	blood
22	chr12:67845800-67846800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr12:67845800-67850400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr12:67846000-67846200	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr12:67846000-67850200	Weak transcription	Liver	Liver

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