Variant report

Variant	rs35583684
Chromosome Location	chr12:67835821-67835822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:67824090..67825052-chr12:67835259..67836288,4	MCF-7	breast:
2	chr12:67835015..67836626-chr12:68041629..68043874,2	MCF-7	breast:
3	chr12:67835312..67836119-chr12:68336837..68337738,4	MCF-7	breast:
4	chr12:67749556..67750279-chr12:67835286..67835947,2	MCF-7	breast:
5	chr12:67835284..67836190-chr12:68017844..68018836,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000127334	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10506549	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10878616	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11176738	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11176739	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11176744	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12828359	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1882033	0.80[ASN][1000 genomes]
rs1882280	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1882282	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1882283	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1920430	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4913247	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4913248	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4913249	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4913323	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4913324	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67939426	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7132295	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7132301	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7298082	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7312115	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7312371	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7312608	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7958866	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1054111	chr12:67556780-67865542	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35583684	CAND1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67830000-67836000	Weak transcription	Psoas Muscle	Psoas
2	chr12:67831000-67836600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr12:67831400-67836000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:67835000-67836400	Enhancers	GM12878-XiMat	blood
5	chr12:67835000-67836600	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr12:67835000-67836800	Enhancers	Stomach Mucosa	stomach
7	chr12:67835000-67837000	Enhancers	Fetal Heart	heart
8	chr12:67835200-67836000	Enhancers	Primary T cells from cord blood	blood
9	chr12:67835200-67836000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr12:67835200-67836000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr12:67835200-67836200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr12:67835200-67836200	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr12:67835200-67836400	Enhancers	Primary T cells fromperipheralblood	blood
14	chr12:67835200-67836400	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr12:67835200-67836400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr12:67835200-67836400	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr12:67835200-67836400	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr12:67835200-67836400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr12:67835200-67836400	Enhancers	Ovary	ovary
20	chr12:67835200-67836400	Enhancers	Rectal Smooth Muscle	rectum
21	chr12:67835200-67836400	Enhancers	Right Atrium	heart
22	chr12:67835200-67836400	Enhancers	NHLF	lung
23	chr12:67835200-67836600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr12:67835200-67836600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr12:67835200-67836800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr12:67835200-67836800	Enhancers	Fetal Intestine Large	intestine
27	chr12:67835200-67836800	Enhancers	Fetal Intestine Small	intestine
28	chr12:67835200-67836800	Enhancers	Fetal Muscle Leg	muscle
29	chr12:67835200-67836800	Enhancers	HSMM	muscle
30	chr12:67835200-67837000	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr12:67835200-67837200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr12:67835400-67836000	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr12:67835400-67836000	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr12:67835400-67836000	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr12:67835400-67836000	Enhancers	Primary B cells from peripheral blood	blood
36	chr12:67835400-67836000	Enhancers	Stomach Smooth Muscle	stomach
37	chr12:67835400-67836200	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr12:67835400-67836200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
39	chr12:67835400-67836200	Enhancers	Fetal Kidney	kidney
40	chr12:67835400-67836200	Enhancers	NHEK	skin
41	chr12:67835400-67836400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr12:67835400-67836400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
43	chr12:67835400-67836400	Enhancers	Adipose Nuclei	Adipose
44	chr12:67835400-67836400	Enhancers	Brain Cingulate Gyrus	brain
45	chr12:67835400-67836400	Active TSS	Brain Substantia Nigra	brain
46	chr12:67835400-67836400	Active TSS	Pancreatic Islets	Pancreatic Islet
47	chr12:67835400-67836400	Enhancers	HSMMtube	muscle
48	chr12:67835400-67836400	Enhancers	K562	blood
49	chr12:67835400-67836400	Flanking Active TSS	Osteobl	bone
50	chr12:67835400-67836600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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