Variant report

Variant	rs1882413
Chromosome Location	chr12:106755078-106755079
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:106753415..106755084-chr17:57829712..57831568,2	MCF-7	breast:
2	chr12:106754585..106756959-chr12:106757525..106759703,2	K562	blood:
3	chr12:106750185..106753856-chr12:106754012..106758624,8	K562	blood:
4	chr12:106750091..106753884-chr12:106754492..106760085,9	MCF-7	breast:
5	chr12:106753014..106755504-chr12:106757647..106759611,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000013503	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10861600	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10861607	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11112983	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11113012	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12231768	0.81[AMR][1000 genomes]
rs2243506	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2244958	0.80[CHB][hapmap]
rs2245062	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246353	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2249162	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2249773	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2250262	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2250653	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2252685	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2253054	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2264761	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2288266	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs2288269	0.80[AMR][1000 genomes]
rs34619628	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3902141	0.84[AFR][1000 genomes]
rs7137444	0.82[CHB][hapmap]
rs7137638	0.85[CHB][hapmap]
rs741624	1.00[AFR][1000 genomes]
rs9308322	0.84[AFR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106752400-106755200	Flanking Active TSS	Liver	Liver
2	chr12:106752400-106775400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr12:106752400-106791600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:106752600-106781800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr12:106752800-106757800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:106752800-106757800	Weak transcription	Primary T cells from cord blood	blood
7	chr12:106752800-106758200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr12:106752800-106760000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr12:106752800-106763200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr12:106752800-106763200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr12:106752800-106763200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr12:106752800-106763200	Weak transcription	Fetal Brain Male	brain
13	chr12:106752800-106763400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr12:106752800-106763400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr12:106752800-106763400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr12:106752800-106772200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr12:106752800-106775800	Weak transcription	Aorta	Aorta
18	chr12:106753000-106757600	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr12:106753000-106757800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr12:106753000-106757800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr12:106753000-106757800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr12:106753000-106757800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr12:106753000-106757800	Weak transcription	HSMMtube	muscle
24	chr12:106753000-106758000	Weak transcription	Brain Anterior Caudate	brain
25	chr12:106753000-106758000	Enhancers	Placenta	Placenta
26	chr12:106753000-106758000	Weak transcription	Fetal Stomach	stomach
27	chr12:106753000-106758000	Weak transcription	Stomach Smooth Muscle	stomach
28	chr12:106753000-106758000	Weak transcription	HSMM	muscle
29	chr12:106753000-106759800	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr12:106753000-106760200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr12:106753000-106760200	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr12:106753000-106760200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr12:106753000-106761200	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr12:106753000-106761400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr12:106753000-106761400	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr12:106753000-106763000	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr12:106753000-106763000	Weak transcription	Primary B cells from cord blood	blood
38	chr12:106753000-106763000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr12:106753000-106763000	Weak transcription	HMEC	breast
40	chr12:106753000-106763000	Weak transcription	NHLF	lung
41	chr12:106753000-106763200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr12:106753000-106763200	Weak transcription	Primary B cells from peripheral blood	blood
43	chr12:106753000-106763200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr12:106753000-106763200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr12:106753000-106763200	Weak transcription	Brain Cingulate Gyrus	brain
46	chr12:106753000-106763200	Weak transcription	Brain Hippocampus Middle	brain
47	chr12:106753000-106763200	Weak transcription	Fetal Thymus	thymus
48	chr12:106753000-106763200	Weak transcription	Ovary	ovary
49	chr12:106753000-106763200	Weak transcription	Rectal Smooth Muscle	rectum
50	chr12:106753000-106763200	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links