Variant report

Variant	rs2245062
Chromosome Location	chr12:106760965-106760966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:106749212..106752012-chr12:106760212..106762041,2	K562	blood:
2	chr12:106751522..106755590-chr12:106759996..106763706,6	MCF-7	breast:
3	chr12:106751289..106753643-chr12:106760048..106762726,3	K562	blood:
4	chr12:106757046..106759589-chr12:106759958..106763656,3	K562	blood:

Variant related genes	Relation type
ENSG00000013503	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10861600	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10861607	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11112983	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11113012	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12231768	0.81[AMR][1000 genomes]
rs1882413	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2243506	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2244958	0.81[CHB][hapmap]
rs2246353	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2249162	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2249773	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2250262	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2250653	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2252685	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2253054	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2264761	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2288266	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs2288269	0.80[AMR][1000 genomes]
rs34619628	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3902141	0.84[AFR][1000 genomes]
rs7137444	0.82[CHB][hapmap]
rs7137638	0.86[CHB][hapmap]
rs741624	1.00[AFR][1000 genomes]
rs9308322	0.84[AFR][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106752400-106775400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:106752400-106791600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:106752600-106781800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr12:106752800-106763200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr12:106752800-106763200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr12:106752800-106763200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr12:106752800-106763200	Weak transcription	Fetal Brain Male	brain
8	chr12:106752800-106763400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr12:106752800-106763400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr12:106752800-106763400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr12:106752800-106772200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr12:106752800-106775800	Weak transcription	Aorta	Aorta
13	chr12:106753000-106761200	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr12:106753000-106761400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr12:106753000-106761400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr12:106753000-106763000	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr12:106753000-106763000	Weak transcription	Primary B cells from cord blood	blood
18	chr12:106753000-106763000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr12:106753000-106763000	Weak transcription	HMEC	breast
20	chr12:106753000-106763000	Weak transcription	NHLF	lung
21	chr12:106753000-106763200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr12:106753000-106763200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr12:106753000-106763200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr12:106753000-106763200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr12:106753000-106763200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr12:106753000-106763200	Weak transcription	Brain Hippocampus Middle	brain
27	chr12:106753000-106763200	Weak transcription	Fetal Thymus	thymus
28	chr12:106753000-106763200	Weak transcription	Ovary	ovary
29	chr12:106753000-106763200	Weak transcription	Rectal Smooth Muscle	rectum
30	chr12:106753000-106763200	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr12:106753000-106763200	Weak transcription	NHDF-Ad	bronchial
32	chr12:106753000-106763200	Weak transcription	Osteobl	bone
33	chr12:106753000-106763400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr12:106753000-106763400	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr12:106753000-106766000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr12:106753000-106772200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr12:106753000-106772800	Weak transcription	Right Ventricle	heart
38	chr12:106753000-106774000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr12:106753000-106775800	Weak transcription	Brain Substantia Nigra	brain
40	chr12:106753000-106788800	Weak transcription	Thymus	Thymus
41	chr12:106753000-106791600	Weak transcription	Esophagus	oesophagus
42	chr12:106753000-106793200	Weak transcription	Colon Smooth Muscle	Colon
43	chr12:106753000-106811800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr12:106753000-106815400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr12:106753200-106761200	Weak transcription	NH-A	brain
46	chr12:106753200-106761800	Weak transcription	Brain Angular Gyrus	brain
47	chr12:106753200-106763000	Weak transcription	NHEK	skin
48	chr12:106753200-106763200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr12:106753200-106763200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr12:106753200-106763200	Weak transcription	Colonic Mucosa	Colon

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