Variant report

Variant	rs1882570
Chromosome Location	chr7:70756661-70756662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10249102	1.00[AMR][1000 genomes]
rs10269114	1.00[AMR][1000 genomes]
rs10273950	1.00[AMR][1000 genomes]
rs10950256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13236986	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1922514	1.00[AMR][1000 genomes]
rs2707424	1.00[AMR][1000 genomes]
rs2707437	1.00[AMR][1000 genomes]
rs7787249	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7791172	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7807116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9638623	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033155	chr7:70712368-70757929	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70751200-70768200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr7:70751600-70757200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:70751800-70768600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:70751800-70768800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:70752200-70773000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:70753800-70760200	Weak transcription	Ovary	ovary
7	chr7:70754200-70757200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:70755800-70763800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:70756000-70762800	Weak transcription	Colon Smooth Muscle	Colon
10	chr7:70756000-70764000	Weak transcription	Fetal Muscle Leg	muscle
11	chr7:70756000-70765000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:70756000-70765200	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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