Variant report

Variant	rs2707424
Chromosome Location	chr7:70829782-70829783
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10249102	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10269114	1.00[AMR][1000 genomes]
rs10273950	1.00[AMR][1000 genomes]
rs10950256	1.00[AMR][1000 genomes]
rs13236986	1.00[AMR][1000 genomes]
rs1882570	1.00[AMR][1000 genomes]
rs1922514	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2707437	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7787249	1.00[AMR][1000 genomes]
rs7791172	1.00[AMR][1000 genomes]
rs7807116	1.00[AMR][1000 genomes]
rs9638623	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70827200-70835000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr7:70828400-70829800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:70828600-70829800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:70828800-70829800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr7:70828800-70829800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:70828800-70829800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr7:70828800-70830200	Enhancers	H9 Cell Line	embryonic stem cell
8	chr7:70829000-70831800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:70829200-70829800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr7:70829200-70829800	Enhancers	Fetal Heart	heart
11	chr7:70829400-70829800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:70829400-70829800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr7:70829600-70830000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:70829600-70830200	Weak transcription	Ovary	ovary
15	chr7:70829600-70838200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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