Variant report

Variant	rs1884518
Chromosome Location	chr20:24083959-24083960
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12106019	1.00[AMR][1000 genomes]
rs12106188	1.00[AMR][1000 genomes]
rs13433317	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2224231	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58097245	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59960570	0.91[AFR][1000 genomes]
rs60840217	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73905109	0.84[AFR][1000 genomes]
rs8117417	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24079200-24085200	Enhancers	NHEK	skin
2	chr20:24079400-24084400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr20:24081200-24084400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr20:24082600-24088000	Enhancers	HUVEC	blood vessel
5	chr20:24082800-24084000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr20:24082800-24084200	Enhancers	Fetal Brain Female	brain
7	chr20:24082800-24085000	Enhancers	Osteobl	bone
8	chr20:24083000-24084800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr20:24083000-24085000	Enhancers	NH-A	brain
10	chr20:24083000-24085600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr20:24083200-24084400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr20:24083200-24084600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr20:24083200-24084600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr20:24083200-24085200	Enhancers	Liver	Liver
15	chr20:24083400-24084600	Enhancers	A549	lung
16	chr20:24083400-24096200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr20:24083600-24084200	Weak transcription	Fetal Brain Male	brain
18	chr20:24083600-24086200	Weak transcription	HMEC	breast
19	chr20:24083800-24084400	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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