Variant report

Variant	rs60840217
Chromosome Location	chr20:24099809-24099810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12106019	1.00[AMR][1000 genomes]
rs12106188	1.00[AMR][1000 genomes]
rs13433317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1884518	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2224231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58097245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59960570	0.97[AFR][1000 genomes]
rs60507886	0.84[AFR][1000 genomes]
rs6106789	0.84[AFR][1000 genomes]
rs6114480	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8117417	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24097000-24100000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
2	chr20:24097200-24100000	Enhancers	Fetal Muscle Leg	muscle
3	chr20:24097800-24100000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr20:24097800-24100200	Enhancers	Osteobl	bone
5	chr20:24098200-24100200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr20:24098200-24100600	Enhancers	Ovary	ovary
7	chr20:24098200-24100800	Enhancers	HUVEC	blood vessel
8	chr20:24098400-24100000	Enhancers	Lung	lung
9	chr20:24098400-24100800	Enhancers	Fetal Thymus	thymus
10	chr20:24098800-24100600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr20:24099000-24100200	Enhancers	Spleen	Spleen
12	chr20:24099200-24100000	Enhancers	Gastric	stomach
13	chr20:24099200-24100000	Enhancers	Pancreas	Pancrea
14	chr20:24099200-24100000	Enhancers	A549	lung
15	chr20:24099200-24100000	Enhancers	NHLF	lung
16	chr20:24099200-24100200	Enhancers	NHEK	skin
17	chr20:24099200-24100400	Enhancers	Esophagus	oesophagus
18	chr20:24099200-24100600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr20:24099200-24100600	Enhancers	Fetal Stomach	stomach
20	chr20:24099200-24101000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr20:24099400-24100200	Enhancers	Duodenum Mucosa	Duodenum
22	chr20:24099600-24100000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr20:24099600-24100600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr20:24099600-24102400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr20:24099800-24100000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr20:24099800-24100200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr20:24099800-24100600	Enhancers	HMEC	breast
28	chr20:24099800-24103400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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