Variant report
| Variant | rs188549 |
|---|---|
| Chromosome Location | chr12:29984212-29984213 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10843534 | 0.81[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11050518 | 0.85[ASN][1000 genomes] |
| rs11050519 | 0.81[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11050525 | 0.81[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12812577 | 0.81[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12813154 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12817638 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12821746 | 0.85[ASN][1000 genomes] |
| rs2200275 | 0.84[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2220131 | 0.84[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs302310 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs302313 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs302360 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs416697 | 0.84[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs444711 | 0.84[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs614490 | 0.81[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7132449 | 0.81[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7133117 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7136398 | 0.83[ASN][1000 genomes] |
| rs73069892 | 0.92[ASN][1000 genomes] |
| rs73071610 | 0.90[ASN][1000 genomes] |
| rs73071623 | 0.86[ASN][1000 genomes] |
| rs7962909 | 0.81[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7979574 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529328 | chr12:29692414-30246209 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv898953 | chr12:29905322-29989292 | Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv469191 | chr12:29939628-30098770 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv557958 | chr12:29939628-30098770 | ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:29983800-29984400 | Enhancers | Gastric | stomach |
