Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10843534	0.92[ASN][1000 genomes]
rs11050518	0.92[ASN][1000 genomes]
rs11050519	0.92[ASN][1000 genomes]
rs11050525	0.89[ASN][1000 genomes]
rs11050526	0.81[ASN][1000 genomes]
rs11050528	0.81[ASN][1000 genomes]
rs12812577	0.93[ASN][1000 genomes]
rs12813154	0.97[ASN][1000 genomes]
rs12821746	0.92[ASN][1000 genomes]
rs12828727	0.81[ASN][1000 genomes]
rs188549	0.90[ASN][1000 genomes]
rs2200275	0.97[ASN][1000 genomes]
rs2220131	0.97[ASN][1000 genomes]
rs302310	0.82[ASN][1000 genomes]
rs302313	0.82[ASN][1000 genomes]
rs302360	0.80[ASN][1000 genomes]
rs416697	0.97[ASN][1000 genomes]
rs444711	0.97[ASN][1000 genomes]
rs614490	0.97[ASN][1000 genomes]
rs7132449	0.93[ASN][1000 genomes]
rs7133117	0.97[ASN][1000 genomes]
rs7136398	0.90[ASN][1000 genomes]
rs7296907	0.84[EUR][1000 genomes]
rs73069887	0.97[EUR][1000 genomes]
rs73069892	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73071176	0.90[EUR][1000 genomes]
rs73071623	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73073127	0.90[EUR][1000 genomes]
rs73073130	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73075113	0.90[EUR][1000 genomes]
rs7962909	0.93[ASN][1000 genomes]
rs7979574	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529328	chr12:29692414-30246209	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv469191	chr12:29939628-30098770	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv557958	chr12:29939628-30098770	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv526146	chr12:29989292-30112823	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv557975	chr12:30000388-30022105	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv20785	chr12:30014747-30022341	Weak transcription Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	diseases
7	nsv557976	chr12:30015190-30022255	Weak transcription Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30018200-30023600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr12:30020200-30027000	Weak transcription	Fetal Kidney	kidney

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