Variant report

Variant	rs73073130
Chromosome Location	chr12:30055071-30055072
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10843534	0.86[ASN][1000 genomes]
rs10843545	0.98[ASN][1000 genomes]
rs11050518	0.86[ASN][1000 genomes]
rs11050519	0.86[ASN][1000 genomes]
rs11050525	0.88[ASN][1000 genomes]
rs11050526	0.98[ASN][1000 genomes]
rs11050528	0.98[ASN][1000 genomes]
rs11050536	0.98[ASN][1000 genomes]
rs11050537	0.98[ASN][1000 genomes]
rs11050547	0.87[ASN][1000 genomes]
rs12578411	0.82[ASN][1000 genomes]
rs12812577	0.85[ASN][1000 genomes]
rs12813154	0.82[ASN][1000 genomes]
rs12821746	0.86[ASN][1000 genomes]
rs12825871	0.87[ASN][1000 genomes]
rs12828727	0.98[ASN][1000 genomes]
rs7132449	0.85[ASN][1000 genomes]
rs7133117	0.82[ASN][1000 genomes]
rs7136398	0.89[ASN][1000 genomes]
rs73069887	0.90[EUR][1000 genomes]
rs73069892	0.90[EUR][1000 genomes]
rs73071176	0.97[EUR][1000 genomes]
rs73071610	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73071623	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73073127	0.97[EUR][1000 genomes]
rs73075113	0.97[EUR][1000 genomes]
rs7962909	0.85[ASN][1000 genomes]
rs7979574	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529328	chr12:29692414-30246209	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv469191	chr12:29939628-30098770	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv557958	chr12:29939628-30098770	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv526146	chr12:29989292-30112823	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2758302	chr12:30023167-30175232	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2759889	chr12:30023167-30175232	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30053400-30063000	Weak transcription	Right Atrium	heart
2	chr12:30054600-30055200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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