Variant report

Variant	rs1885855
Chromosome Location	chr13:52223081-52223082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1923874	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4456399	0.90[ASN][1000 genomes]
rs4533167	0.90[ASN][1000 genomes]
rs4943008	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4943014	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6561644	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7320201	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7327107	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7984225	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7988297	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7990679	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9285179	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9526792	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9535716	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9535720	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs992583	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832612	chr13:52176983-52362525	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52219600-52253800	Weak transcription	Psoas Muscle	Psoas
2	chr13:52219800-52233800	Weak transcription	A549	lung
3	chr13:52220400-52259000	Weak transcription	Thymus	Thymus
4	chr13:52220600-52223200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr13:52220600-52227600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:52220600-52228200	Weak transcription	Esophagus	oesophagus
7	chr13:52220600-52228400	Weak transcription	Lung	lung
8	chr13:52220600-52233400	Weak transcription	Ovary	ovary
9	chr13:52220600-52233400	Weak transcription	Right Atrium	heart
10	chr13:52220600-52236400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr13:52220800-52223200	Weak transcription	Aorta	Aorta
12	chr13:52220800-52225400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr13:52220800-52229800	Weak transcription	Adipose Nuclei	Adipose
14	chr13:52220800-52233600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr13:52221000-52223600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr13:52221000-52225800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr13:52221000-52226000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr13:52221000-52227800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr13:52221000-52228000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr13:52221000-52229200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr13:52221000-52235800	Weak transcription	HSMM	muscle
22	chr13:52221200-52228000	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr13:52221200-52228000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr13:52221200-52228400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr13:52221200-52253800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr13:52221400-52223200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr13:52221400-52227800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr13:52221400-52228000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr13:52221600-52233400	Weak transcription	Osteobl	bone
30	chr13:52221600-52238000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr13:52222000-52223600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr13:52222000-52223600	Enhancers	Pancreas	Pancrea
33	chr13:52222200-52223600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr13:52222400-52223400	Weak transcription	Brain Substantia Nigra	brain
35	chr13:52222400-52223400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr13:52222400-52229600	Weak transcription	HepG2	liver
37	chr13:52222600-52227000	Weak transcription	NHEK	skin
38	chr13:52223000-52223600	Enhancers	Left Ventricle	heart

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