Variant report

Variant	rs4533167
Chromosome Location	chr13:52167096-52167097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:52165459..52167828-chr13:52169558..52171705,2	K562	blood:
2	chr13:52165298..52167854-chr13:52172353..52174094,2	K562	blood:
3	chr13:52157062..52162024-chr13:52162079..52168293,13	MCF-7	breast:
4	chr13:52023783..52027256-chr13:52163004..52167854,10	K562	blood:

Variant related genes	Relation type
ENSG00000236778	Chromatin interaction
ENSG00000206920	Chromatin interaction
ENSG00000224451	Chromatin interaction
ENSG00000139668	Chromatin interaction
ENSG00000102786	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1885855	0.90[ASN][1000 genomes]
rs1923874	0.85[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs4456399	0.83[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs4943008	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943014	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6561644	0.81[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs7320201	0.85[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7327107	0.81[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs7984225	0.84[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs7988297	0.86[ASN][1000 genomes]
rs7990679	0.81[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs9285179	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526792	0.84[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs9535716	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9535720	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs992583	0.81[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52159600-52170600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:52159600-52174600	Weak transcription	Spleen	Spleen
3	chr13:52160200-52168000	Weak transcription	Pancreas	Pancrea
4	chr13:52160200-52170800	Weak transcription	Fetal Intestine Small	intestine
5	chr13:52160200-52181400	Weak transcription	Thymus	Thymus
6	chr13:52160400-52173400	Weak transcription	Right Atrium	heart
7	chr13:52160400-52177000	Weak transcription	Right Ventricle	heart
8	chr13:52160600-52169400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr13:52160600-52172200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr13:52160800-52168000	Weak transcription	Primary T cells from cord blood	blood
11	chr13:52161400-52167600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr13:52161400-52168800	Weak transcription	Fetal Brain Female	brain
13	chr13:52162800-52180200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr13:52163000-52170400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr13:52163200-52182600	Weak transcription	Ovary	ovary
16	chr13:52164200-52169200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr13:52165400-52168800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr13:52165400-52169200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr13:52165400-52169200	Weak transcription	Esophagus	oesophagus
20	chr13:52165400-52169200	Weak transcription	Gastric	stomach
21	chr13:52165400-52174200	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr13:52165600-52169200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr13:52165600-52170600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr13:52165600-52170600	Weak transcription	Psoas Muscle	Psoas
25	chr13:52165600-52173400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr13:52165600-52173400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr13:52165600-52188600	Weak transcription	Fetal Stomach	stomach
28	chr13:52165800-52168000	Weak transcription	Brain Substantia Nigra	brain
29	chr13:52165800-52169200	Weak transcription	Fetal Brain Male	brain
30	chr13:52165800-52169400	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr13:52165800-52169400	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr13:52165800-52170600	Weak transcription	Fetal Kidney	kidney
33	chr13:52165800-52173200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr13:52165800-52179000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr13:52166000-52167200	Weak transcription	Stomach Mucosa	stomach
36	chr13:52166000-52167200	Enhancers	HSMM	muscle
37	chr13:52166000-52168000	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr13:52166000-52168000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr13:52166000-52168000	Weak transcription	HepG2	liver
40	chr13:52166000-52168200	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr13:52166000-52168600	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr13:52166000-52168600	Enhancers	Muscle Satellite Cultured Cells	--
43	chr13:52166000-52168600	Weak transcription	Brain Angular Gyrus	brain
44	chr13:52166000-52168800	Weak transcription	Brain Hippocampus Middle	brain
45	chr13:52166000-52168800	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr13:52166000-52169200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr13:52166000-52170600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr13:52166000-52170800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr13:52166000-52172600	Weak transcription	Adipose Nuclei	Adipose
50	chr13:52166000-52172600	Weak transcription	Brain Cingulate Gyrus	brain

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