Variant report

Variant	rs1886097
Chromosome Location	chr13:51836402-51836403
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51828567..51831393-chr13:51834161..51836601,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SERPINE3-2	chr13:51835089-51836507	NONHSAT033894

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9591400	0.84[CEU][hapmap]
rs9596486	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51816200-51836600	Weak transcription	Adipose Nuclei	Adipose
2	chr13:51821600-51839000	Weak transcription	Esophagus	oesophagus
3	chr13:51821600-51845000	Weak transcription	Fetal Brain Male	brain
4	chr13:51824200-51844000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:51824400-51836600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr13:51825400-51840600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr13:51826400-51854600	Weak transcription	Aorta	Aorta
8	chr13:51832000-51837800	Genic enhancers	Brain Cingulate Gyrus	brain
9	chr13:51832600-51837600	Enhancers	Left Ventricle	heart
10	chr13:51832800-51843200	Weak transcription	Fetal Lung	lung
11	chr13:51833200-51837600	Enhancers	Right Ventricle	heart
12	chr13:51833400-51839400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr13:51833600-51836800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:51833600-51836800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:51833600-51838200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr13:51833600-51860400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr13:51834000-51837400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr13:51834000-51837800	Enhancers	Brain Substantia Nigra	brain
19	chr13:51834000-51845200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr13:51834000-51850800	Weak transcription	Pancreas	Pancrea
21	chr13:51834200-51836600	Strong transcription	Brain Germinal Matrix	brain
22	chr13:51834200-51839400	Weak transcription	Lung	lung
23	chr13:51834200-51856400	Weak transcription	Gastric	stomach
24	chr13:51834800-51837800	Enhancers	Fetal Heart	heart
25	chr13:51835200-51837400	Genic enhancers	H1 Cell Line	embryonic stem cell
26	chr13:51835200-51837400	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr13:51835200-51837600	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr13:51835200-51837800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr13:51835400-51837200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr13:51835400-51837600	Enhancers	Brain Anterior Caudate	brain
31	chr13:51835600-51837200	Genic enhancers	HUES48 Cell Line	embryonic stem cell
32	chr13:51835600-51837800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr13:51835800-51837200	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr13:51835800-51837200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr13:51835800-51837400	Genic enhancers	HUES6 Cell Line	embryonic stem cell
36	chr13:51835800-51837400	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr13:51835800-51837600	Genic enhancers	H9 Cell Line	embryonic stem cell
38	chr13:51835800-51837600	Genic enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr13:51835800-51837600	Enhancers	Brain Angular Gyrus	brain
40	chr13:51836000-51836800	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr13:51836000-51845600	Weak transcription	Fetal Brain Female	brain
42	chr13:51836200-51836600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr13:51836200-51836600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr13:51836200-51836800	Weak transcription	Fetal Stomach	stomach
45	chr13:51836200-51837000	Weak transcription	Spleen	Spleen
46	chr13:51836200-51837200	Genic enhancers	HUES64 Cell Line	embryonic stem cell
47	chr13:51836200-51837400	Enhancers	Fetal Muscle Leg	muscle
48	chr13:51836200-51837600	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr13:51836200-51837600	Enhancers	Stomach Smooth Muscle	stomach
50	chr13:51836200-51837800	Enhancers	Fetal Muscle Trunk	muscle

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