Variant report

Variant	rs9591400
Chromosome Location	chr13:51835149-51835150
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51828567..51831393-chr13:51834161..51836601,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SERPINE3-2	chr13:51835089-51836507	NONHSAT033894

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1022854	1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs17075482	1.00[CHB][hapmap]
rs1886097	0.84[CEU][hapmap]
rs4942982	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7995246	1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs9535627	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9568572	1.00[CHB][hapmap]
rs9596486	1.00[CEU][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51816200-51836600	Weak transcription	Adipose Nuclei	Adipose
2	chr13:51816800-51836000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr13:51821600-51836200	Weak transcription	Fetal Muscle Leg	muscle
4	chr13:51821600-51839000	Weak transcription	Esophagus	oesophagus
5	chr13:51821600-51845000	Weak transcription	Fetal Brain Male	brain
6	chr13:51824200-51844000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr13:51824400-51836600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr13:51825400-51840600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr13:51826400-51854600	Weak transcription	Aorta	Aorta
10	chr13:51829400-51835800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr13:51829800-51835800	Strong transcription	Fetal Stomach	stomach
12	chr13:51829800-51836000	Strong transcription	Fetal Brain Female	brain
13	chr13:51830400-51835800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr13:51830800-51836200	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr13:51831800-51836400	Genic enhancers	Brain Hippocampus Middle	brain
16	chr13:51832000-51837800	Genic enhancers	Brain Cingulate Gyrus	brain
17	chr13:51832200-51835600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr13:51832200-51835800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr13:51832600-51836200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr13:51832600-51837600	Enhancers	Left Ventricle	heart
21	chr13:51832800-51843200	Weak transcription	Fetal Lung	lung
22	chr13:51833200-51836400	Enhancers	Rectal Smooth Muscle	rectum
23	chr13:51833200-51837600	Enhancers	Right Ventricle	heart
24	chr13:51833400-51835800	Strong transcription	H9 Cell Line	embryonic stem cell
25	chr13:51833400-51839400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr13:51833600-51835200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
27	chr13:51833600-51835600	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr13:51833600-51836800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr13:51833600-51836800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr13:51833600-51838200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr13:51833600-51860400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr13:51833800-51835200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr13:51833800-51835800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr13:51834000-51835200	Strong transcription	H1 Cell Line	embryonic stem cell
35	chr13:51834000-51835400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr13:51834000-51837400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr13:51834000-51837800	Enhancers	Brain Substantia Nigra	brain
38	chr13:51834000-51845200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr13:51834000-51850800	Weak transcription	Pancreas	Pancrea
40	chr13:51834200-51835200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr13:51834200-51835400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr13:51834200-51835800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr13:51834200-51836600	Strong transcription	Brain Germinal Matrix	brain
44	chr13:51834200-51839400	Weak transcription	Lung	lung
45	chr13:51834200-51856400	Weak transcription	Gastric	stomach
46	chr13:51834400-51835200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr13:51834400-51835800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr13:51834400-51835800	Weak transcription	Right Atrium	heart
49	chr13:51834600-51835200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
50	chr13:51834600-51835200	Weak transcription	Brain Inferior Temporal Lobe	brain

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