Variant report

Variant	rs1886355
Chromosome Location	chr6:33776877-33776878
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33774712..33778330-chr6:33783087..33786924,3	K562	blood:
2	chr6:33776830..33783261-chr6:33784291..33788356,6	K562	blood:
3	chr6:33767158..33770119-chr6:33775833..33777551,2	MCF-7	breast:
4	chr6:33770698..33776163-chr6:33776764..33781728,7	K562	blood:

Variant related genes	Relation type
ENSG00000096395	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10947439	0.88[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1547669	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1547670	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7774407	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462897	chr6:33717770-33778964	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv602839	chr6:33717770-33778964	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33771400-33777000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:33773200-33777400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:33773200-33777400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:33774400-33777600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:33775000-33777000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:33775200-33777200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
7	chr6:33775400-33777600	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:33775600-33778000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:33775800-33777800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
10	chr6:33775800-33777800	Bivalent Enhancer	Fetal Muscle Leg	muscle
11	chr6:33775800-33778000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:33776000-33777600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr6:33776000-33778000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr6:33776200-33777600	Enhancers	H9 Cell Line	embryonic stem cell
15	chr6:33776200-33777600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:33776200-33777600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:33776200-33778000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr6:33776200-33778000	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr6:33776200-33778000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr6:33776400-33777800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr6:33776400-33777800	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr6:33776400-33792400	Weak transcription	Right Atrium	heart
23	chr6:33776600-33777000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr6:33776600-33777400	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
25	chr6:33776800-33777000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
26	chr6:33776800-33777800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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