Variant report

Variant	rs1887672
Chromosome Location	chr9:16045467-16045468
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1328295	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1328297	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1576170	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1887670	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1887671	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1927704	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2987078	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv831521	chr9:15974174-16106565	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1025555	chr9:16022186-16064158	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2761506	chr9:16040491-16093736	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16030800-16050000	Weak transcription	Aorta	Aorta
2	chr9:16040600-16057600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:16041200-16049600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:16041400-16046200	Weak transcription	Fetal Intestine Large	intestine
5	chr9:16041400-16048000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:16043200-16046000	Enhancers	Fetal Stomach	stomach
7	chr9:16043400-16045600	Enhancers	Osteobl	bone
8	chr9:16043400-16045800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:16043400-16046000	Enhancers	Fetal Kidney	kidney
10	chr9:16043400-16046400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr9:16043600-16045600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:16043600-16045800	Enhancers	Adipose Nuclei	Adipose
13	chr9:16043600-16045800	Enhancers	Hela-S3	cervix
14	chr9:16043800-16045600	Enhancers	Fetal Muscle Leg	muscle
15	chr9:16043800-16045600	Enhancers	HSMM	muscle
16	chr9:16044000-16045600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:16044800-16045800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:16044800-16046000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:16045200-16045600	Enhancers	Right Atrium	heart
20	chr9:16045400-16045600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:16045400-16045800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:16045400-16047200	Enhancers	Duodenum Mucosa	Duodenum
23	chr9:16045400-16057600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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