Variant report

Variant	rs1887714
Chromosome Location	chr6:39364028-39364029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12175497	0.81[CHB][hapmap];0.86[CHD][hapmap]
rs12176100	0.81[CHB][hapmap]
rs1328383	0.82[ASW][hapmap]
rs16892009	0.81[CHB][hapmap]
rs6917494	0.84[AFR][1000 genomes]
rs716951	0.81[CHB][hapmap]
rs716952	0.81[CHB][hapmap]
rs716953	0.81[CHB][hapmap]
rs7774367	0.81[CHB][hapmap];0.86[CHD][hapmap]
rs9349118	0.81[CHB][hapmap]
rs9349119	0.81[CHB][hapmap];0.86[CHD][hapmap]
rs9357304	0.81[CHB][hapmap]
rs9380854	0.81[CHB][hapmap];0.86[CHD][hapmap]
rs9380855	0.81[CHB][hapmap]
rs9380856	0.81[CHB][hapmap]
rs9380857	0.82[CHD][hapmap]
rs9380858	0.81[CHB][hapmap];0.86[CHD][hapmap]
rs9394590	0.81[CHB][hapmap]
rs9471088	0.81[CHB][hapmap];0.86[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv533806	chr6:39270073-39397337	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39356000-39369600	Weak transcription	Brain Angular Gyrus	brain
2	chr6:39357600-39365200	Weak transcription	Brain Substantia Nigra	brain
3	chr6:39361600-39364600	Enhancers	Fetal Brain Female	brain
4	chr6:39362400-39369600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:39362600-39367800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:39362600-39369600	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:39363200-39364800	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr6:39363400-39364400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:39364000-39365600	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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