Variant report

Variant	rs9380856
Chromosome Location	chr6:39358892-39358893
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12175497	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12176100	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs16892009	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1887714	0.81[CHB][hapmap]
rs6917494	0.89[ASN][1000 genomes]
rs6938522	0.89[ASN][1000 genomes]
rs716951	1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs716952	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs716953	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs72850612	0.99[ASN][1000 genomes]
rs72850620	1.00[AFR][1000 genomes]
rs72860021	0.86[ASN][1000 genomes]
rs72860024	0.86[ASN][1000 genomes]
rs72860026	0.86[ASN][1000 genomes]
rs72860027	0.85[ASN][1000 genomes]
rs72860061	0.97[ASN][1000 genomes]
rs72860064	0.99[ASN][1000 genomes]
rs72860068	0.99[ASN][1000 genomes]
rs72860069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860072	0.99[ASN][1000 genomes]
rs7738339	0.99[ASN][1000 genomes]
rs7738352	0.86[ASN][1000 genomes]
rs7774367	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9349118	1.00[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs9349119	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9357304	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9367005	1.00[AFR][1000 genomes]
rs9369113	0.92[CHB][hapmap];0.85[ASN][1000 genomes]
rs9380850	0.93[CHB][hapmap];0.85[ASN][1000 genomes]
rs9380851	0.89[ASN][1000 genomes]
rs9380852	0.98[ASN][1000 genomes]
rs9380853	0.99[ASN][1000 genomes]
rs9380854	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs9380855	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9380857	0.93[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9380858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394588	0.86[CHB][hapmap]
rs9394590	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9471087	0.89[ASN][1000 genomes]
rs9471088	1.00[CHB][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv533806	chr6:39270073-39397337	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39356000-39364000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:39356000-39369600	Weak transcription	Brain Angular Gyrus	brain
3	chr6:39356400-39363200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:39356800-39361600	Weak transcription	Fetal Brain Female	brain
5	chr6:39357000-39361800	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:39357600-39365200	Weak transcription	Brain Substantia Nigra	brain
7	chr6:39358800-39359200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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